barSeed - Barley Seed Development Database

Probe CUST_38532_PI390587928

Source Contig U35_42074

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38532_PI390587928	Hv_44K_v2	TTTGATGCTAAGGCTGGAATTGCTCTGAACGACCATTTCGTCAAGCTTGTCTCGTGGTAT	440	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18233.1	1651	2e-24	205 - 264	100	60 / 60	minus	ABC00149 ABC00865 ABC48865 ABC49755
JLOC1	JLOC1_12611.1	2002	8e-25	1150 - 1209	100	60 / 60	plus
Harvest21	ABC37464	508	3e-25	441 - 500	100	60 / 60	plus
Harvest21	ABC00747	640	3e-25	16 - 75	100	60 / 60	plus
Harvest21	ABC00149	1454	3e-25	1019 - 1078	100	60 / 60	plus	ABC00149
Harvest35	U35_42074	508	3e-25	441 - 500	100	60 / 60	plus
Harvest35	U35_297	438	3e-25	16 - 75	100	60 / 60	plus
Harvest35	U35_286	1455	3e-25	1020 - 1079	100	60 / 60	plus
Harvest35	U35_99	1416	3e-25	979 - 1038	100	60 / 60	plus

Contig Sequence (508 bp)

>U35_42074 508 Hv_44K_v2
GAGACACTTCCCCCGTCCCCAGCGAACCTCCCCACCACCATCTCGCGTCGCGGCGTCAGT
TCCACTCCTTCGCCATGGGCAAGATTAAGATCGGAATCAACGGTTTCGGAAGGATCGGGA
GGCTCGTCGCCAGGGTCGCACTCCAGAGCGACGATGTCGAGCTCGTCGCCGTCAACGACC
CCTTCATCACCACCGAGTACATGGCTGTTGGTAAGGTTCTTCCTGAGCTGAATGGCAAGC
TTACCGGTATGTCTTTCCGGGTTCCCACTGTGGATGTGTCAGTTGTTGATCTCACTGTTA
GAACCGAGAAGGCTGCATCATATGATGACATCAAGAAGGCTATCAAGGCTGCTTCCGAGG
GAAAGCTCAAGGGTATCATGGGTTACGTTGAGGAAGATTTGGTCTCCACCGACTTCGTTG
GTGACAGCAGGTCCAGCATCTTTGATGCTAAGGCTGGAATTGCTCTGAACGACCATTTCG
TCAAGCTTGTCTCGTGGTATGACAACGA

Homology of Contig U35_42074 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g03290.3	293	5e-57	protein\|glyceraldehyde-3-phosphate dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi3g14120.3	338	2e-61
Arabidopsis v10	AT3G04120.1	338	5e-54	\| Symbols: GAPC, GAPC-1, GAPC1 \| glyceraldehyde-3-phosphate dehydrogenase C subunit 1 \| chr3:1081077-1083131 FORWARD LENGTH=338