- Probe CUST_38527_PI390587928
- Source Contig U35_42077
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_38527_PI390587928 | Hv_44K_v2 | CGCGTGTGTGCTAATAAGTGACACAGCTAAATGTACTAAGCTTATGTGGAAAGACTATCT | 27 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.054 | 1.408 | 1.199 | 0.993 | 0.410 | 0.431 |
| Raw | 376.631 | 768.969 | 577.318 | 754.098 | 107.746 | 125.411 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK364882 | 2719 | 7e-23 | 2638 - 2698 | 98 | 60 / 61 | plus | ABC18528 ABC37467 ABC44309 |
| Harvest21 | ABC37467 | 561 | 3e-25 | 28 - 87 | 100 | 60 / 60 | minus | ABC37467 |
| Harvest21 | ABC18528 | 720 | 1e-23 | 39 - 99 | 98 | 60 / 61 | minus | ABC18528 |
| Harvest35 | U35_42077 | 561 | 3e-25 | 28 - 87 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_8018 | 720 | 1e-23 | 622 - 682 | 98 | 60 / 61 | plus |
Contig Sequence (561 bp)
>U35_42077 561 Hv_44K_v2 TTTTTTTTTTTTTTTTTGAGTTAATATAGATAGTCTTTCCACATAAGCTTAGTACATTTA GCTGTGTCACTTATTAGCACACACGCGCGCAATCTTCTCATCTACAACAGGAATTGAGCA GCCTCAACTACACCCGTGCCATGTGTCAAGAGTATCTCTATCTATGCACACCAATCATTA GAATCACTTCATTCTCCTTACCACCTTACAAAAAACAATTAAGAGCTATGTTTCAGCTAC AACTTTGCTTGCTCGCATCAAGGAGAAATGGAATCAATGTCAATGGTAGCAGGACTGTGT TGTGATCTGAAGCCTTACACTATATACATTGTTTTCATGACTGGATGATGTAGCAGGTCT TGCTTTGCTATGCAGTAGCACCCCATGGAAGTCCCTGGATGCACGGTGAACTGGTCCCGG AACTGGCCTACCCGCTTGCTTGGAATGTCGATATCAATTTCGTACAGACTGGGCATCCCT TCAGCTTGCAACCCTTCACCAAATATTAGGAATTGGTTGCCCGTGATAAATGATCCAGAC ACACGAATAGCGATTTCTGTT
Homology of Contig U35_42077 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |