barSeed - Barley Seed Development Database

Probe CUST_38513_PI390587928

Source Contig U35_4936

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38513_PI390587928	Hv_44K_v2	TCCTCATATAACACATATCAGTAGACTATATGATCCATGGGTGTTCTAGACCCGAAAAAA	1443	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.549	1.268	1.118	0.893	0.259	0.303
Raw	848.696	1124.401	839.891	1074.381	109.299	137.482

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363797	1313	3e-22	1250 - 1305	100	56 / 56	plus	ABC05689 ABC18326
MLOC	MLOC_80153.1	1498	3e-22	568 - 623	100	56 / 56	minus	ABC05689 ABC18326
JLOC1	JLOC1_53381.1	1162	1e-22	240 - 295	100	56 / 56	minus
Harvest21	ABC18326	524	3e-25	454 - 513	100	60 / 60	plus	ABC18326
Harvest35	U35_4936	1514	3e-25	1444 - 1503	100	60 / 60	plus

Contig Sequence (1514 bp)

>U35_4936 1514 Hv_44K_v2
ACAAGTCCTTCCTAGGTTGCGAGACCCAGCCCGGCACCCTCCCCACTGCCCGCCTCCCCT
CCCCTCCCCTCCCCCGGCCGTCCATTACCTCGGCCGCCTCCACCTCCGCCTCCGCCTCCC
CACGAGCGCTGGGGCTTCCAGATTCCTAGCCACACATGACCCTCCGCACCGACGAAACAC
CAGAGACGGAGACATGGGGCTGAAGGGGTTCGTCGAGGGCGGCGCCGCCTCCGTCGTCGC
CGGCTGCTCGACGCACCCGCTCGACCTCATCAAGGTCCGCATGCAGCTACAGGGCGAGGC
GGCCCGGATCCCAGCCCCGGCCATGCGCTTCGCCCTCGTGTTCCCCCCCGGCGTGCAGCA
CCACCACCACCACGACCACCTCCTGCAGCCTCCGCGCAAGCCCGGGCCCATCGCCATCGG
CGCGCAGATCTTGCGCGCGGAGGGCCCCGCAGGGCTGCTCTCCGGGGTGTCGGCAACCGT
GCTGCGGCAGGCGGTCTACTCCTCGACCTCCATGGGGCTCTACGACACGATCAAGAGGAG
GTGGGAGCGGGAATCCGGCGGCGCCGCCCTGCCGCTGCACCGGAAGATCGCGGCCGGGCT
CGTCGCCGGCGGCGTCGGCGCGACAGTGGGTAACCCGGCTGACGTGGCCATGGTGCGGAT
GCAGGCGGACGGGCGGCTCCCCGCGGCCGAGCGGCGGAACTACCGAAGCGTCGCTCATGC
CATCACCCGGATCGCGCGCGACGAGGGCGTGCGCAGGCTCTGGCGCGGGTCCTCTCTCAC
GGTCAACCGCGCCATGATCGTGACGGCGTCGCAGCTGGCCACCTACGACCAGGCCAAGGA
GGCAATCCTTTCCCGGCGCGGCCCGGGCGGCGACGGGCTGGCGACGCACGTGGCGGCCAG
CTTCACGGCCGGCCTGGTGGCCGCGGCGGCGTCCAGCCCCGTGGACGTGGTCAAGACGAG
GGTCATGAACATGAAGGTGGAGCCCGGCGCCCCGCCGCCGTACGCCGGCGCGATCGACTG
CGCCATCAAGACGGTGCGGTCGGAGGGCGCGCTGGCGCTGTACAAGGGCTTCATTCCGAC
GGTGACGCGACAGGGACCCTTCACCGTCGTGCTCTTCGTCACGCTGGAGCAGGTCCGGAA
GCTGCTCAAGGACTTCAACTTCTGAGAGACCCAGGAAGACGGCATGGCCATCGCCAATCT
GGCCCAGGATTGTAGCGTACCCCATTGGTAAAAACTATGATCACCTCCTCTCCCATCGAT
CGCAAGCTGCAGCTCCACACCGTTCTCTGCGCCTGCACGGATTTGATAAATTATGGTGGG
AATTTTGATGTGTGCTACTTTCTGATCATTTACTGGGGAATTTTGATGTGTGCTAATTTC
TGATCAGTTAGTGGGGAATTTTGATCTATGCCAAAAAAAAAAAAAAAATTTGTCTTGGTC
AGTTCCTCATATAACACATATCAGTAGACTATATGATCCATGGGTGTTCTAGACCCGAAA
AAAAAAAAAAAAAA

Homology of Contig U35_4936 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g37370.2	328	7e-148	protein\|mitochondrial carrier protein, putative, expressed
Brachypodium v1_2	Bradi4g32510.1	320	5e-176
Arabidopsis v10	AT2G22500.1	313	2e-113	\| Symbols: UCP5, ATPUMP5, DIC1 \| uncoupling protein 5 \| chr2:9563531-9564472 REVERSE LENGTH=313