barSeed - Barley Seed Development Database

Probe CUST_38511_PI390587928

Source Contig U35_42086

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38511_PI390587928	Hv_44K_v2	GTGGATGATCCTTCACTTCCACAGAATTCCTACTAATATGATCAAGTATGTTCGTCTGTA	16	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14264.1	469	2e-24	20 - 79	100	60 / 60	minus	ABC01123 ABC37479
JLOC1	JLOC1_9733.1	470	8e-25	21 - 80	100	60 / 60	minus
Harvest21	ABC37479	573	3e-25	17 - 76	100	60 / 60	minus	ABC37479
Harvest35	U35_42086	573	3e-25	17 - 76	100	60 / 60	minus

Contig Sequence (573 bp)

>U35_42086 573 Hv_44K_v2
TTTTTTTTTTTTTTTTTACAGACGAACATACTTGATCATATTAGTAGGAATTCTGTGGAA
GTGAAGGATCATCCACAAAATTGAAACAGATTGATGCAACATTACTAGTAAGGACTCGGC
AAAAATAAAACTGGGAAGATACACACGTACGAGTCAGACTGAAGCATCGACATTTAGCAT
TTCTTCAGAAATTTCGGGTTTTGAACACGGTTACTTCAGATCTAAAAACACTGCCCAGAG
CACAAATTTCTTCCAAGACGACAGTCGGAACATAATAATCTAACTACAGCCGATTCATCA
CACACCACCGGGAGGCATNAGAAGAGGGGGGCTCGTCACATCACAGAAGAAGGGGAGAGA
GCCTANGAGGAGGTGAATTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCG
AGCTCGCCGGGGAGGACGAGGCGGACGGAGGTCTGGATCTCCCGGGAGGTGATGGTGGGC
TTCTTGTTGTAGCGGCCGAGCTTGGCGGCCTCGCCGGCGAGCTTCTCGAAGATGTCGTTG
ATGAAGGAGTTCATGATGGACATGGCCTTGGAG

Homology of Contig U35_42086 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None