- Probe CUST_38507_PI390587928
- Source Contig U35_42088
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_38507_PI390587928 | Hv_44K_v2 | TTAGAGGATGCACTCACAGGCTGCACGTTTTAAAAACCGGAATGTACTATTGCCCGCAAA | 14 | GeneList: darkred MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.876 | 1.209 | 1.360 | 1.084 | 0.650 | 0.880 |
| Raw | 62.830 | 132.541 | 128.994 | 152.633 | 33.733 | 50.829 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_7783.2 | 2779 | 3e-21 | 1848 - 1907 | 97 | 58 / 60 | plus | ABC12374 ABC37482 |
| MLOC | MLOC_7783.3 | 3015 | 3e-21 | 1848 - 1907 | 97 | 58 / 60 | plus | ABC12374 ABC37482 |
| Harvest21 | ABC37482 | 570 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus | ABC37482 |
| Harvest35 | U35_42088 | 570 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus |
Contig Sequence (570 bp)
>U35_42088 570 Hv_44K_v2 TTTTTTTTTTTTTTTTTGCGGGCAATAGTACATTCCGGTTTTTAAAACGTGCAGCCTGTG AGTGCATCCTCTAAAGCATACGTAATGCTCCAGGATCACACGCCCAGTTGCAACAAGAGC AGTTCACGAAACATTAAATCTGGCATACAATTTCCAAAACAATAGCAGCGTTAAAAAGCA AAAATAACTAGCTATCCTTTTACAATTCCAACTTGAGGGGGCAGCACAGAACAGCCATTG AAGTCAAATAATAAACATCTTATCTTGTTAGTGGACAAAATTTATTTGGTTCAAGGGTCG TAGTCTTACTGGATCTTTAAACTGGCTGTTCACTTGCTCGATCACGTCCTTCATGCCTTC AATTCTCCCAAGCATCATATCCTCGTTCAAATCATCACCGAGACCAAAAAGTCGACTGGC CTGATTTATCAGACCACCGAATCTATTCTTTAAGTCCATCATTTTCTCTAGGCCCTTCTC CAGTGTTGCTGGAAACTGCAGCAACCGTAAAGTATGCCCTGTAGGAGCAGTATCAAAAAC TACAACGGAGTAATCCATTGTTTGAACTAA
Homology of Contig U35_42088 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |