barSeed - Barley Seed Development Database

Probe CUST_38505_PI390587928

Source Contig U35_4940

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38505_PI390587928	Hv_44K_v2	CCAAGATCTCAAGGAAGAAGGTCGTCCACACCCTCACGACCGTGCTCAACCATCGGTCGA	573	GeneList: darkred MasterList: Cell_cycle_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.164	1.411	2.649	1.240	0.282	0.175
Raw	47.276	85.354	144.932	110.306	8.176	5.687

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371664	1721	2e-24	617 - 676	100	60 / 60	plus	ABC04958
MLOC	MLOC_8595.1	1180	2e-24	26 - 85	100	60 / 60	plus	ABC04958
JLOC1	JLOC1_5703.1	1327	8e-25	28 - 87	100	60 / 60	plus
Harvest21	ABC18604	658	3e-25	599 - 658	100	60 / 60	plus
Harvest35	U35_4940	633	3e-25	574 - 633	100	60 / 60	plus

Contig Sequence (633 bp)

>U35_4940 633 Hv_44K_v2
ATCCCCCAACCCGACGAGCGCAGCCGTAGCAGGGACGAATCGGAGGCCGCCCTGTTCCGT
CCGGGAGCTCGCCGGAGGAGCCGCACCTCGCCGGTTCCCGAGGTCTTCTAACGGAGCCGG
AACAAGCGCAACTCATGGCGACGAGGCACAACAACCAGCACGCGGCTGCCGCTCCGCAGC
CGGCGGCCAACGGAGGTGCAGAAGGCCCGGCAGGGAGGCAGAAGGGCGCCGCCGCCGGTG
GCCGCGTTGCTGGAGGAAACAGGCGGGTGCTCGGGGACATCGGCAACGTAGTCCAAACCA
CCGTCCTCGACGGGAAGATCCAGCTGCCGGCGGGGATCAATCGCCCGATCACAAGGAGCT
TCGGCGCTCAGCTCTTGAAGAAGGCCCAGGCCGAGCCATCAAAGAACGACGTAGCTGTTC
CTCCAGCAGCGCGGCCCGCCCAGAAGCGGGTTGCCAAGAAGGACCCTGTCAAGGCCGCCG
CCGCCCCGATCCCCGAGCCGGCGGCCGCCAATATCGCCACCGGCTCAGACGAAAACAGAA
AGCCGTCCGAGGGCGCCGCCGCCGGCGCTGCCCCCAAGATCTCAAGGAAGAAGGTCGTCC
ACACCCTCACGACCGTGCTCAACCATCGGTCGA

Homology of Contig U35_4940 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None