barSeed - Barley Seed Development Database

Probe CUST_38504_PI390587928

Source Contig U35_4941

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38504_PI390587928	Hv_44K_v2	GAGCTGGGTTTTATTTTACTTGCTCCGTATATTCACAGTATTTGTTGTCTTCATTGTAAC	1670	GeneList: turquoise MasterList: Cell_cycle_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.413	1.578	1.466	0.841	0.216	0.268
Raw	1648.400	2824.225	2317.773	2159.780	191.031	257.213

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7713.1	632	2e-24	562 - 621	100	60 / 60	plus	None
JLOC1	JLOC1_5094.1	839	8e-25	561 - 620	100	60 / 60	plus
Harvest21	ABC15687	1458	6e-22	1377 - 1436	97	58 / 60	plus
Harvest35	U35_4941	1794	3e-25	1671 - 1730	100	60 / 60	plus

Contig Sequence (1794 bp)

>U35_4941 1794 Hv_44K_v2
AAACGGCTACTTTCTACCGCCGCCGCCGCCGCCGCCTCAACCCCACGGCCAGGCCGTCCG
CTCCTATAAAGCTTCACGCCTCTCCCGTCCACCGAGAGCAAAAACTAGCAGCAGAGAGGG
ATCGGTGGGAGAGAGGCCCGTTCTTCCCCGTTCTGATCAAGAGCTCGCCGGAAGCACCGA
CCGTCGGCCTTTGAACGGAGCCGGAACAGCAAGTCCCCATGGCGACCATCCATGACCAGC
ACGCGGCTGCCGCTCCGCAGCCGGCCAACAGAGGTGCCGTAGGCCCGGCAGGGAAGCAGA
AGGGCGCCGCCGCCGGTGGCCGCGTTGCGGGAGGAAACAGGCGGGTGCTAGGGGACATCG
GCAACGTCGTCCACGCCAACGTCCTCGACGGCAAGATCCAGCTGCCGGCGGGGATCAATC
GGCCAATCACCCGGAGCTTCGGCGCTCAGCTCTTGAAGAAGGCCCAGGCCGAACCATCAA
AGAACGGCCTAGCTGTTCCTCCAGCAGCGCGGGCCGCCCTGAAGCCGGTTGCCAGGAAGG
TCCCTGTCAAGCCCGCCGCACCTCGCCCTGAGCCGGCGGCCAAGATCGTCACCGCCTCCG
ACGAAAACAGGAAGCCATCCGAGGGCGGCGCCCCCAAGATCTCCAGGAAGAAGGCCGTAC
ACACCCTCACGACTGTGCTCAACCATCGCTCCAAGGAGGCCTGCGTCCATGACATCGACA
AGCTTGACAGCGACAATGAGCTCGCCGTCGTCGACTACATCGACGACATCTACAAGTATT
ACAATGTCGCCCAGCACGAGTGCCGGCCCATCGATTACATCGGGAGCCAGCCGGAGATCA
GCCTCAAGATGAGGGCCATCTTGACGGACTGGCTTGTGGAAGTAGCCCATAAGTTTGAGC
TTATGCCCGAGAGCCTATACCTCACAATGTACGCCATCGACAGGTTCCTCTCCTTGCAGG
CGGCGGTGCCCCGGCGGGAGCTGCAGCTCGTCGGCATGGCGGCCATGCTCATCGCCTGCA
AATATGAGGAGACCTGGGCGCCCGAGGTAAACGATTTCATTTCCATCGCGGACAACGCAT
ACTCGAGGCATCAGATCCTGTCCATGGAGAAGAACATGCTCAACAGCATGGAGTGGAACC
TCACTGTGCCCACCCCGTACGTCTTCCTGGTGCGGTTCGCCAAGGCCGCCGGGAGCGACA
AGGAGCTTGAACAAATGATTTTCTTCTTCGCCGAGATGGCGCTCATGAACTACGGGCTGG
TGACGGCGCGCCCCTCGCTGGTGGCCGCGTCTGCCGTCTATGCTGCTCGGTGCACGCTGA
AAAGAAGTCCCATNTGGACAGAAACCCTCAAGCACCACACCGGACTCACCGGACTCACTG
AAGCGCAGCTCCTGGAGCCTGCCAGGTCGCTGGTCAAGGCTCACGCCGCCGCTCCCGAGA
GCAAGCTCAAGGCCGTCTACAGGAAGTACTCCAGCGAGCAGTATGGGCGTGTGGCCCTCC
GCCCCCCAGCGGTTGCCTGGCTTTTGAAGTTTTGATCCAGAAAGCTTGGTTTACTATCTG
ATGAAGTGATGATACACCAGGGTGTACAACAGCTAATATATTCATTCATATATTTGAATA
GACTTCGTTCAAAGTATTGTTTAGCGATTTGCTTGGCTTTCGAATCAAGAGAGCTGGGTT
TTATTTTACTTGCTCCGTATATTCACAGTATTTGTTGTCTTCATTGTAACAATAACAATT
CATACTAGTTTGAATCGAATTCAGAGTATTCCTTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4941 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g41390.1	450	4e-140	protein\|cyclin, putative, expressed
Brachypodium v1_2	Bradi2g21330.1	434	3e-147
Arabidopsis v10	AT5G06150.1	445	2e-86	\| Symbols: CYC1BAT, CYCB1;2 \| Cyclin family protein \| chr5:1859542-1861570 REVERSE LENGTH=445