barSeed - Barley Seed Development Database

Probe CUST_38500_PI390587928

Source Contig U35_4943

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38500_PI390587928	Hv_44K_v2	TTCATTTCATTGCTTACGGATGTACACAAGCCCACCCGTGCAAAACATTCAACATCCAAA	1264	GeneList: thistle1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.198	2.568	1.051	0.899	0.341	0.426
Raw	313.994	302.141	110.603	145.404	20.350	26.406

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44161.4	1330	2e-23	1254 - 1311	100	58 / 58	plus	ABC13271
MLOC	MLOC_44161.1	6604	2e-23	2075 - 2132	100	58 / 58	plus	ABC10691 ABC13271
MLOC	MLOC_44161.3	5809	2e-23	1280 - 1337	100	58 / 58	plus	ABC10691 ABC13271
JLOC1	JLOC1_28595.2	3073	1e-23	2856 - 2913	100	58 / 58	minus
JLOC1	JLOC1_28595.1	2773	1e-23	2556 - 2613	100	58 / 58	minus
JLOC1	JLOC1_28594.1	5812	1e-23	1283 - 1340	100	58 / 58	plus
Harvest35	U35_4943	1338	3e-25	1265 - 1324	100	60 / 60	plus

Contig Sequence (1338 bp)

>U35_4943 1338 Hv_44K_v2
GCTCTTACGCTCACGGTAGTATAGCTAAGGCAGTCCTCGCCTCACACGCAGAGAGTGTGC
GCTCATGCTAGAATAATGGCGGCGGCCATGTCCATTGCAGCCACCACCTGCTGCTCCTCC
CCCTTCCCCGCAAAACCCAGCCGGCACATCGCAGCCTACTCCCGTGCTCCTCGCCTTCCT
CTTCCTCGGCCAGCTTGGCGCCGCTCTCTCCTTGCCGCCTCCTTGCCGGCGAGCCGCCTC
CGCCTCCGCCCCCGGACCTCCCTGTCGGCGTCTCCGGCCGCAGCGCACGACTACGAGTTC
ACCGATACAACCGGAGAGGTGGAGCTGAGGCTGGACATAGGAAAGCTTGGCATCGAGAGT
TCAAGAGATGTTTTTGTTGACGTCGATGACACGTCCCTGCTCATCAGAGCCAAGTCTGAC
GGAACACTGAGGACTTTGATGAATGTCGGGACGCTATTCGACAGGGTTAAGTCTTCTGAG
ACGATATGGTTCATTGATGAGGATCAGCTGGTGGTGAACCTGAAGAAAGTCGAGCAGGAA
TTGAAATGGCCCGACATTGATGAATCATGGAAATCCCTCACTGCTGGGATCACACAGTTA
TTGACAGGGATCAGCATTCACATAGTTGGAGATTCCACGGATATCAACGAGGCGGTCGCT
AAAGAGATTGCTGAGGGCATCGGGTATCTTCCAGTTTGCACCAGTGAGCTGCTAGAGAGT
GCCACTCAAAAGTCCGTTGATACATGGGTGGCTGCGGAAGGGGTGGACTCAGTAGCTGAA
GCGGAATGTGTTGTCCTAGAAAGCCTTAGCAGCCATGTCCGTACCGTGGTAGCGACTCTG
GGTGGCAAGCAAGGAGCGGCGAGCAGGTTCGACAAATGGCAGTACCTTCATTCTGGATTC
ACGGTGTGGTTGTCGGTGTCCGAGGCCGGTGATGAAGCCTCTGCCAAAGAGGAGGCCAGG
AGAAGCGTTAGCACTGGGAGCGTGGCCTATGCGAAGGCGGATGTGGTGGTGAAGCTGGGT
GGATGGGACCCGGAGTACACGCAAGCTGTGGCACAGGGCTGCCTTGTTGCCTTGAAGCAG
CTCACCTTGGCAGATAAGAAGCTAGCAGGGAAGAAGAGCCTTTACATCAGGCTAGGCTGT
CGAGGGGACTGGCCCAACATCGAGCCACCCGGCTGGGATCCTCAATCAGATGCCCCGCCG
ACCAACATCTAGTCCAGCTTCAGGAACCTTTACTTTATTTTTCTTTTCTTTTTTCGAGAC
TTCATTCATTTCATTGCTTACGGATGTACACAAGCCCACCCGTGCAAAACATTCAACATC
CAAAAAAAAAAAAAAAAA

Homology of Contig U35_4943 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g42700.1	376	0.0	protein\|CS domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g34245.1	274	0.0
Arabidopsis v10	AT2G35500.1	387	2e-133	\| Symbols: SKL2 \| shikimate kinase like 2 \| chr2:14914038-14915909 FORWARD LENGTH=387