- Probe CUST_38493_PI390587928
- Source Contig U35_4947
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_38493_PI390587928 | Hv_44K_v2 | CCTCCTTGTACGTACGGTCGTAGCGCCATGATAAGTTGATAACGAATGAGAATTGGGTTG | 268 | GeneList: paleturquoise MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 4.997 | 1.592 | 1.197 | 0.819 | 0.242 | 0.292 |
Raw | 133.151 | 75.986 | 47.114 | 52.716 | 4.108 | 6.050 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK368913 | 964 | 2e-24 | 905 - 964 | 100 | 60 / 60 | plus | ABC13345 |
MLOC | AK356899 | 1521 | 2e-24 | 73 - 132 | 100 | 60 / 60 | minus | ABC13345 |
MLOC | MLOC_55957.1 | 1653 | 2e-24 | 136 - 195 | 100 | 60 / 60 | minus | ABC13345 |
JLOC1 | JLOC1_36140.1 | 1303 | 8e-25 | 1063 - 1122 | 100 | 60 / 60 | plus | |
Harvest21 | ABC13345 | 352 | 3e-25 | 271 - 330 | 100 | 60 / 60 | plus | ABC13345 |
Harvest35 | U35_4947 | 360 | 3e-25 | 269 - 328 | 100 | 60 / 60 | plus |
Contig Sequence (360 bp)
>U35_4947 360 Hv_44K_v2 GTCGCTGAAAAGCAGAGCAAGGAGGGCGGCAGCCGGCCGCGAGACGACCGCCGATCATCA CCAGCAGCCATCGCCGTCTTCGACCTCGAGCTGCGTCACGGACCACGCTTGCCACGCTCC AGACCAAGAAGAGGTCAGCAGCCAGCAGCAGCATCCGAGACGCTAGCTAGCTTCCAGCAG CAGCAGCGCGATGATCATGCCTCCCAAAGAGGCCTAGCCTAGCCAGGCATACAATTCCAG CCTCCCTTCCCTTCCTTGTACCTCCTGTCCTCCTTGTACGTACGGTCGTAGCGCCATGAT AAGTTGATAACGAATGAGAATTGGGTTGAAGAGAAAAAAAAAAAAAAAAAAAAAAAAAAA
Homology of Contig U35_4947 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |