barSeed - Barley Seed Development Database

Probe CUST_3848_PI390587928

Source Contig U35_124

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3848_PI390587928	Hv_44K_v2	AACTACTCACAATAGCGTGGCTGCGACGCAAATCGTAATCTAGTTGACATTGTGGAAGGA	708	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16420.1	1594	7e-23	139 - 198	98	59 / 60	plus	ABC00651
JLOC1	JLOC1_11301.1	1809	4e-23	1393 - 1452	98	59 / 60	minus
Harvest21	ABC00651	1748	1e-23	1431 - 1490	98	59 / 60	minus	ABC00651
Harvest35	U35_124	891	3e-25	709 - 768	100	60 / 60	plus
Harvest35	U35_261	1723	1e-23	1461 - 1520	98	59 / 60	minus

Contig Sequence (891 bp)

>U35_124 891 Hv_44K_v2
ACCTTTCNTACAGGCGCCGCCTCTCGCATGACCACGAAGAGCGCCAGAGGTTCTCTGAGA
AGATCATTGTCCTGCTCCTCACCGTCGATGCGCTCGAGGGACCTGACTTCATGGTGAGGA
CGGCGAAGAAATCTATGCTGGAGGAACTCGAGAGCATGCTTGAGATTGTGGACCCACAGC
CACCAGGGAAGCAGAGGTCGTTCAGCCGCCGCAAGTTTGATCTTCCAGAGGGCGGGGCGA
TCCCGAATGAGAAAACTGCAGGCGTGAACAATGCTGTCAGAGTCATCAACACTGGCAAGG
GCAAGCAGTAGGCACCGCCGCGCGCCTAGTTTAGTGGTGGTACCATGGCCGATTGATGGA
GCTTGTAGCGCCACTTTGTCTGTGAGTGGTCTGGTTCATCTTAGATTTCCAGTACCTTTG
AGATTTGAGAAGGATTGAACTTGTCGTGCACCGTTATTCAGGATGTCGTAGCGTGTAATG
TATGATCCGTACCGGTACCATTTGCTTTGGATTTGTTGTAATGTATGTTGTTGTTGAACT
ACCAGGGGAAGAGTTTGGTGCTTTAACAACAGCAAAAAAAAAAAAAAAAATCCGTGAGTT
TTGCCAGATTATTTATTACTGTACCTCTGAATTAACGGACACATCATCAGCATCCTGACT
TACAACTCGAGCTGGAAGGACCCAAAAATCCCAGCAAACTATAGAAGGAACTACTCACAA
TAGCGTGGCTGCGACGCAAATCGTAATCTAGTTGACATTGTGGAAGGAGTCGATGATGGC
ATCAGCAAGGTACTCGCATTTCGCCAGGTTCAGTCCTGCCAACGAAATCCTCCCGTCCTT
GGTCATATATATGTGCCATTTATCGGTCATGTTATCGCTCTGGGTTCTGTT

Homology of Contig U35_124 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None