barSeed - Barley Seed Development Database

Probe CUST_38487_PI390587928

Source Contig U35_4950

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38487_PI390587928	Hv_44K_v2	ATGGGATGCATAGGAAGATTTGCCATGCTTAACAATGCTATAATGTTCTGAAGAATTCGT	719	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.908	1.780	1.137	0.843	0.376	0.376
Raw	637.994	916.254	520.562	606.550	95.937	103.909

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54634.1	417	2e-24	320 - 379	100	60 / 60	plus	ABC12186 ABC12187 ABC41845
MLOC	MLOC_53236.1	890	2e-24	437 - 496	100	60 / 60	minus	ABC12186 ABC12187 ABC41845
JLOC1	JLOC1_35173.1	419	8e-25	321 - 380	100	60 / 60	plus
Harvest21	ABC12187	582	3e-25	520 - 579	100	60 / 60	plus	ABC12187
Harvest35	U35_4950	782	3e-25	720 - 779	100	60 / 60	plus

Contig Sequence (782 bp)

>U35_4950 782 Hv_44K_v2
CCTCGTGCCGCATGTGAGATTGATGTTTTAAATCAGCGAGGGGACTTGTGTCTTCGTCAT
TGTTCGTAACGCTTCGTCAAGAATAATTGAAGCTTCAGTAGCGACGCCTCCACCGCCTGG
AAGAAGAAGGTCCTGGTCTTGTCGCTGTTGCTCTTCTGCAAGTTGCTCCTCCTCCGCCCG
GAGCTGCTGCTGGTCGTGGTGGTGGACGCCGGCTGTTGCTGCTGCTGGTGGTGTTCTACG
CCTTTGCTTCCACCGCTGCTGCTGGTGGCCAACGCCGACGCCCTCCGATCCCCGCCATTG
ACCCCCGAGGCATCCACCTCTGCTTATAGAAGAAGAAGAAGTTCCTTGGAAATTTGAGGA
GCCTGCGAGATTCATATACAGCAATGGCAGCTGGGTCACTTTCAAATTCAAGCGAGCCTT
CATCCGTCACAAAAATCATTTCAGACTGTGAATCCGCGCTCACGTTCTTAAACAACAGCC
TTGCCATCCTTTCAACTTCCGTGGCACGGGAGCAGGGTGAAACGCTGTGATTTTATGGCC
GTCTTATACCAAGATTCAACTCTGGTACACGGGTGTAAGCTTGTAGTGATTCAGTTGTTT
GCCTTTTGGTTTCAGTTGAGGCGCGGAGTAAAGCTTGTGTTCCCATTGTCGGTGTGGTAG
TGTATTTGTGTGTGGTTGTTGATTCTTTTGCAGTTGTAACTTGTGACGTTCAGTGAACAA
TGGGATGCATAGGAAGATTTGCCATGCTTAACAATGCTATAATGTTCTGAAGAATTCGTT
TT

Homology of Contig U35_4950 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None