barSeed - Barley Seed Development Database

Probe CUST_38472_PI390587928

Source Contig U35_3145

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38472_PI390587928	Hv_44K_v2	CAGGTTTCATTTGGGAGGAGAGATTCATGTTTTGGCTGTGTCTTTGTGTATTTTTAGAAA	1193	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.615	5.991	1.534	0.690	0.328	0.389
Raw	336.890	432.788	92.302	66.526	10.077	14.757

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74910.4	1441	2e-24	1356 - 1415	100	60 / 60	plus	ABC08515
MLOC	MLOC_74910.3	1487	2e-24	1402 - 1461	100	60 / 60	plus	ABC08515
MLOC	MLOC_74910.1	1366	2e-24	1260 - 1319	100	60 / 60	plus	ABC08515
JLOC1	JLOC1_49938.3	1140	8e-25	855 - 914	100	60 / 60	plus
JLOC1	JLOC1_49938.2	1493	8e-25	1208 - 1267	100	60 / 60	plus
JLOC1	JLOC1_49938.1	1545	8e-25	1260 - 1319	100	60 / 60	plus
Harvest21	ABC08516	1262	3e-25	1183 - 1242	100	60 / 60	plus
Harvest21	ABC08515	680	3e-25	52 - 111	100	60 / 60	minus	ABC08515
Harvest35	U35_3145	1307	3e-25	1194 - 1253	100	60 / 60	plus

Contig Sequence (1307 bp)

>U35_3145 1307 Hv_44K_v2
AGCCCAGTGACCGTGCGAGCGCTCAGGTCGAGGTCGAACCGGGGTGAGGAAATGGCGGGC
GCGACCTTCCTCTCCGCTCCCGCGCTGCTCGGCCTCCCTTCCGTCTCGTCGCCGGCGCGC
AGGCACGCGCACGTTCAGGTGTGCTGCCAGGCCAAAGCCGGCGGCTCCGAGGATGCCGCC
GCTTGCCAAGAGGCTCCCCGGTTCCACAGAAGGGATCTGATCGGCGGCTGCTTCGGCGCC
GCCGTTGGCTTGGAAATCGCCGAGGCCTCGACGAGGTCCACGGGAGTGGCTGCTGCGGCT
GACCTGATCGAACGCCGGCAGCGCTCCGAGTTCCAGTCAAGCATCAAAAGCACCCTCACA
GCAGCCATAGAGGCAAAGCCGGAGCTCGTCCCATCTTTGTTGACCTTGGCACTGAATGAT
GCTATGACATATGACAAGGCAACAAAGACAGGAGGCCCAAATGGATCCATCAGGCTAAGT
GCAGAAATAAGCAGACCTGAAAACAGTGGCCTTTCTGCTGCCTTGGATCTGCTAGTAGAA
GCAAAGAAAGAGATTGATTCCTACTCCAAGGGAGGCCCCATTTCATTTGCAGATTTGGTC
CAAATAGGAGCATCACAGGCACTTAAGAAAACGTTCCTTGATGCGGCCATTGCCAAGACC
GGTGGGAACCAAGAGAAGGGAAGGACCCTGTACTCGGCATACGGTTCAAGTGGGCAGTGG
GGTTTCTTCGACAAAATATTCGGGCGAGATGATGTGCAAGAGCCTGATCCGGAGGGCAGG
GTGCCACAGTGGAGCACCGCTTCCGTGCAGGAAATGAAGGACAAGTTCATCTCCGTTGGT
CTCGGTCCTCGTCAGGTTGCTGTGATGTCGGCCTTCTTCGGACCCGACCAAGCTGCCACA
GAGGCGAAACTGATCGTTGATCCGGACTGCCGTCCGTGGGTCGAGAAGTACCAGCGCAGT
CGCGAGACAGTCTCCCGGACCGACTACGAGGTTGATCTGATAACCACGGTCACCAAGTTG
AGCTACCTGGGCCAGAAGATAAACTACGAGGCCTACACATACCCCAAGCAAAAGATTAAC
TTGGGTAACCTGAAGCTGTGATTGATGATTGCTCTGGGTGTTTCTGTGAGCAATGGCGTC
ATTCGAGAATTGAGAGCTCCATCCATCTGGTACTGTTGGGTGTCTACGGGGAGCAGGTTT
CATTTGGGAGGAGAGATTCATGTTTTGGCTGTGTCTTTGTGTATTTTTAGAAAAAGAAAT
AGAAATATATATATTGCCTCTGGCCTCAGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_3145 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g51300.1	354	0.0	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi5g20670.1	367	0.0
Arabidopsis v10	AT4G09010.1	349	3e-138	\| Symbols: APX4, TL29 \| ascorbate peroxidase 4 \| chr4:5777502-5779338 REVERSE LENGTH=349