barSeed - Barley Seed Development Database

Probe CUST_38470_PI390587928

Source Contig U35_3147

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38470_PI390587928	Hv_44K_v2	CTATACTACATTTGGCGTTGCAGTTTATTCTACTTAAGCTACAAGATACAGAGTTGAGAT	84	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58146.1	1214	2e-24	42 - 101	100	60 / 60	minus	None
JLOC1	JLOC1_37748.1	1325	8e-25	1104 - 1163	100	60 / 60	plus
Harvest21	ABC07466	624	3e-25	85 - 144	100	60 / 60	plus
Harvest35	U35_3147	624	3e-25	85 - 144	100	60 / 60	plus

Contig Sequence (624 bp)

>U35_3147 624 Hv_44K_v2
GCCAATATTCCTATAAATTATGGTTTCCTTGTCTCTGTAAGCTACTACAAGAAATCAAGG
TGCATCAGAAACAAGTTTTACTTCCTATACTACATTTGGCGTTGCAGTTTATTCTACTTA
AGCTACAAGATACAGAGTTGAGATTTGAGCTTGAAGCTGAGGAAGCTGCTAATTCTATCC
AGAATTCTCTTGGAACTCTCATGGAGGAAGTTGTCTTGTGCACTGTGTCTGTCAAAGACA
AAAAAGACAAAAAAGGGGACATTTCTGGTGATATTCTAAAGGAAGTCAGGAATAATGCCA
ATACTGTGCTGAAAATAGTTACAGGATGGATGCATGCTTCAACATATTTCAAAGGAATTA
CTCGGTTGTTAGAACATCCAGAAGGTCTTGTGAAAAGAAAGACCCTTGGAATATTGTGTG
AAACTGCAAGAGCGAATAACATGGGCCAGCCTTTCAAACCAATCTGTAAGTATGTTGCTA
TCCGTACTTACAACTATTCAGGTGATTGTGCAAAAACTTGGGGAATTTGTTAGTCCATAT
CTGGAAGAAATACTGGATCTCGTGATATTGCATCCTGAATGTGCTACTCAAATTGATGGA
AAGTTGGATGTAAAAGCAGCAGAT

Homology of Contig U35_3147 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g46310.1	2143	9e-51	protein\|HEAT repeat family protein, putative, expressed
Brachypodium v1_2	Bradi5g17540.1	2189	1e-54
Arabidopsis v10	None