barSeed - Barley Seed Development Database

Probe CUST_38469_PI390587928

Source Contig U35_3148

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38469_PI390587928	Hv_44K_v2	TCTTCTGCCCGGGCCTTGTTACTGCATGCAATTTTTATTAAACACCGTCATGTTAAAAAA	2115	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.573	1.542	1.144	0.672	0.285	0.363
Raw	2096.457	3143.807	2079.033	1935.684	286.006	403.571

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74624.1	2175	3e-22	2096 - 2151	100	56 / 56	plus	ABC07467
JLOC1	JLOC1_49743.1	2276	1e-22	2102 - 2157	100	56 / 56	plus
Harvest35	U35_3148	2186	3e-25	2116 - 2175	100	60 / 60	plus

Contig Sequence (2186 bp)

>U35_3148 2186 Hv_44K_v2
GGGAAGCTGCTAATTCTATCCAGAATTCTCTTGGAACTCTCATGGAGGAAGTTGTCTTGT
GCACTGTGTCTGTCAAAGACAAAAAAGACAAAAAAGGGGACATTTCTGGTGATATTCTAA
AGGAAGTCAGGAATAATGCCAATACCGTGCTGAAAATAGTTACAGGATGGATGCATGCTT
CAACATATTTCAAAGGAATTACTCGGTTGTTAGAACATCCAGAAGGTCTTGTGAAAAGAA
AGACCCTTGGAATATTGTGTGAAACTGCAAGAGCGAATAACATGGGCCAGAACAAGCAAA
GCAAAGCAAGGAAACTGAAGCGCAGCTCTCTGTCTACTGCCCTCCAAGTGGACAAGAGCT
CTTGCCCTTATTTCAGCGAGCTGTGCTACAAGATTCTAGAGTTGATTGATAGAGAGTCAG
ACACATATGTGAAAATTGCTGCTATTTCTTCACTCGAAACACTAGCGAAAGAATATCCCT
CTGAAAATCCTGCATATAGCAAGTGCTTTGCGACAATCATTAGTCACATAAGCTCTGGTG
ATTCTGTCACTTCTTCCGGGTTAATAAATACCGCAGGGTCTCTGATTAACGTGCTAGGAT
CAAAAGCATTACCTCAGCTTCCACTTATCATGAAAAATATGCTGCAAAGAGCACATCTGG
TGTCATGTTGCCCTAGCGGAAAATATGCTCATGGTTCTCCGAGAACTGATGCCAGCCTTT
CAAACCAATCTGTAAGTATGTTGCTATCCGTACTTACAACTATTCAGGTGATTGTGCAAA
AACTTGGGGAATTTGTTAGTCCATATTTGGAAGAAATACTGGATCTCGTGATATTGCATC
CTGAATGTGCTACTCAAATTGATGGAAAGTTGGATGTAAAAGCAGCAGATGTCCGAGGGC
TACTGACCGAGACAGTTCCAGTTCGGCTTATTCTTCCACCTCTACTGAATTTGTATTCCA
GTGCTACCAAATGTGGAGATGCAAGCCTGTCATTGTCATTCCAAATGCTTGAGAATGTAG
TTGGTACAATGGATCGGCTGGCTGTAGGAACTTACCATACAAAAATATATGAACACTGTT
TGGAAGCCCTTGATCTCCGTCGTCAGCATCTGGACTCCTTGAAGAATATAAATTTAGTTG
AGCAAAGTATTATCCACACCATCATCACTCTCACGATGAAGCTTACGGAGACCACTTTTA
GGCCTCTTTTCCTTCGTACTCTTGAATGGGCAGAGTCTGAAGTTGATCAGTCCACATCAA
AGAAAAGTATGGACCGTGCAATTGTTTTCTACAAGTTGATCAACAAGCTCGCAGAACAAC
ACAGGTCCTTGTTTACACCTTACTTCAAGTACCTACTTGAGGGATCGGTACAATATCTAT
CAGAAGATGGTGTCTTGATCAGTTCCAAGCGAAAGAAGAAGGCTAAACTTGGAGACGATA
TAGTCAAACATAATAATAGTTTGTCAGGACAAAAGCTGTGGATCTTGAGAGCACTGATAC
TGAAATCATTGCACAAGTGCTTTCTTTACGACAATGATCAGAAGATCCTAGATTCCTCCA
ATTTCCAGACTCTTTTGAAGCCCATTGTTTCTCAGTTTGTTGCGGAACCGCCTGAATCTC
TTGAATCAGTTCCAGACGCTCCATCAGTTGAGGAAGTGGATGAAATTCTTGTTTCATGCT
TGGGACAGATGGCAGTGACTGCCCGATCAGATGTTTTGTGGAAGCCTCTTAACCATGAGG
TGCTGATGCAGACAAGAAGTGACAATGTCCGCCCTAAGATGCTGGGCCTCAAGGTGGTGA
GGTACATGGTCCAACACCTGAAGGAGGAGTATGTGGTTCTGGTCCCGGAGACCATCCCGT
TCCTGGGCGAACTGCTCGAGGACGTTGAGCTTCCTGTCAAAACGCTGTCCCAGGAGATAC
TCAAGGAGATGGAGACCCTCAGCGGCGAGAGCCTCCGGGAGTACCTGTGATATCTCTCCC
CAGACTAGTCCTCGCTCCAGTGGTTGGCAGTAGTCACATCGATCTTGCTTGTTGTATGTA
AACTACACAGGATGAATGGCTTCGGGTACAACATATTTTGTTGTTTACATGTGTGAACTA
GTGAACCATATAGTTTCTTCTGCCCGGGCCTTGTTACTGCATGCAATTTTTATTAAACAC
CGTCATGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_3148 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g46310.1	2143	0.0	protein\|HEAT repeat family protein, putative, expressed
Brachypodium v1_2	Bradi5g17540.1	2189	0.0
Arabidopsis v10	AT3G06530.2	2199	4e-161	ARM repeat superfamily protein \| chr3:2022596-2033637 FORWARD LENGTH=2199