barSeed - Barley Seed Development Database

Probe CUST_38468_PI390587928

Source Contig U35_3149

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38468_PI390587928	Hv_44K_v2	TGTAATGCCAGCGTTTAATTGCTCTGCTAATTTTCTCGTAATCTCCTTGGCGATAAAAAA	407	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16398.3	897	7e-23	22 - 78	100	57 / 57	minus	ABC09202 ABC09203
MLOC	MLOC_16398.1	2190	7e-23	108 - 164	100	57 / 57	minus	ABC09202 ABC09203
MLOC	MLOC_16398.2	2189	7e-23	108 - 164	100	57 / 57	minus	ABC09202 ABC09203
JLOC1	JLOC1_11286.2	2243	4e-23	2028 - 2084	100	57 / 57	plus
JLOC1	JLOC1_11286.1	2169	4e-23	1954 - 2010	100	57 / 57	plus
Harvest21	ABC09203	477	3e-25	11 - 70	100	60 / 60	minus	ABC09203
Harvest21	ABC09202	1907	1e-23	1833 - 1889	100	57 / 57	plus	ABC09202
Harvest35	U35_3150	1953	3e-25	1847 - 1906	100	60 / 60	plus
Harvest35	U35_3149	477	3e-25	408 - 467	100	60 / 60	plus

Contig Sequence (477 bp)

>U35_3149 477 Hv_44K_v2
CAGCAGCTTCGCCGCCGAAGACTGGGACGACCGGCCGCGGACGATAGAGGAGATTCAAGC
GATGCTTCAGACGAGGAAAGACGCTGCACTCAAGCGTGAGAGAGCTCTCTCATACGCCTT
CTCTCACCAAATTTGGAGGAACCCCGCGCCGTCAGTCGAGGAAGAGATGGACGTCGACGG
GCAGCCGCGCTGGGCGGAGAGGTGGATGGCGTCTCGCGCGTCGTTTGACACAAACAGGAG
CAGCACCCGAACTGCCGCGGCGGCTGCTGCTGCGGCACCCGGGCGCGCGTCCACGGACCA
CCGCGACCAGGTCAAGACGTTGGAGATCGACACTGCGCGGCCATTCTCCTACTCCACTGA
TCTCCGCCGCTGGCTCCGTTGAGTTGAATCGCCGGCGAGGTGTTCGTTGTAATGCCAGCG
TTTAATTGCTCTGCTAATTTTCTCGTAATCTCCTTGGCGATAAAAAAAAAAAAAAAA

Homology of Contig U35_3149 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g02250.1	544	2e-53	protein\|IQ calmodulin-binding motif domain containing protein, expressed
Brachypodium v1_2	Bradi3g13710.1	584	4e-51
Arabidopsis v10	None