barSeed - Barley Seed Development Database

Probe CUST_38467_PI390587928

Source Contig U35_3150

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38467_PI390587928	Hv_44K_v2	GTGTTCGTTGTAATGCCAGCGTTTAATTGCTCTGCTAATTTTCTCGTAATCTCCTTGGCG	1838	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.518	2.477	1.401	0.829	0.393	0.717
Raw	467.450	1188.960	566.011	558.661	87.978	176.488

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16398.3	897	2e-24	27 - 86	100	60 / 60	minus	ABC09202 ABC09203
MLOC	MLOC_16398.1	2190	2e-24	113 - 172	100	60 / 60	minus	ABC09202 ABC09203
MLOC	MLOC_16398.2	2189	2e-24	113 - 172	100	60 / 60	minus	ABC09202 ABC09203
JLOC1	JLOC1_11286.2	2243	8e-25	2020 - 2079	100	60 / 60	plus
JLOC1	JLOC1_11286.1	2169	8e-25	1946 - 2005	100	60 / 60	plus
Harvest21	ABC09203	477	3e-25	19 - 78	100	60 / 60	minus	ABC09203
Harvest21	ABC09202	1907	3e-25	1825 - 1884	100	60 / 60	plus	ABC09202
Harvest35	U35_3150	1953	3e-25	1839 - 1898	100	60 / 60	plus
Harvest35	U35_3149	477	3e-25	400 - 459	100	60 / 60	plus

Contig Sequence (1953 bp)

>U35_3150 1953 Hv_44K_v2
AAGCCCCCCACTGCCCGCGCCTGCCAGCCGCGGCAATAATAATATCTCGGCCGCCTCCTG
CCATGCCGCACGCTAGCACGCTAGGATCGAGTAGCTCGTAGCGTAGCCGTGCGACGGAGG
GAGGTGGGTCGATGCCCGCGGCCGTGGAACAACAGCAACCGCGAGCCGGTGGTGTCCGCC
ATGGGGAATAAGAAGGGCGGGTCGTCGTGGCTCACCGCCGTCAAGCGGGCCTTTCGCTCG
CCGTCCAAGGAGGACAGCCCCAAGAAGTCTGCACGCCTGCGCGAGGACCCCGACGCCGAC
GAGGATAAGACCAAGAGGGAGAGGAGGAGATGGCTCTTCAGGAGATCCTCGTCCCCGTCT
CCTTCCCCGGCGTCTGCTACCGCGCCGCCGGAGCAGCAGCAATCGGCGGCGAGGTCGGCA
CCTGCGCCTGCTGTAACGGACGAGCAGCGTCACGCCATCGCGCTCGCCGTGGCGACCGCG
GCGACGGCCGAGGCTGCCGTGGCCACGGCTCAGGCGGCGGCTGAGGTCGTCCGCCTGACC
CGCCCCTCCTCCAGCTTCGTGCGGGAGCACTACGCCGCCATTGTCGTGCAGACCGCCTTC
CGAGGCTACCTGGCGAGGCGTGCTCTGCGCGCGCTCAAGGGGCTGGTGAAGCTGCAGGCG
CTAGTGCGCGGGTACAACGTGCGGAAGCAGGCCAACATGACGCTGCGGTGCATGCAGGCG
CTGGTGCGCGTCCAGGCGCGCGTGCGCGACCAGCGGATGCGACTCTCCCAGGAGTCCCTG
TCCGCCGCCGGTGCGGCTGGCTGTGGCAGCAGCAAATCCTCCTACAGCGTTGACACATCC
GCTTTGTGGGACTCCAAGTACACCCAAGAATACGCCGAACGCCGCTCTGTGGAGCGGTCG
CGAGACGGCAGCAGCTTCGCCGCCGAAGACTGGGACGACCGGCCGCGGACGATAGAGGAG
ATTCAAGCGATGCTTCAGACGAGGAAAGACGCTGCACTCAAGCGTGAGAGAGCTCTCTCA
TACGCCTTCTCTCACCAAATTTGGAGGAACCCCGCGCCGTCAGTCGAGGAAGAGATGGAC
GTCGACGGGCAGCCGCGCTGGGCGGAGAGGTGGACGGCGTCTCGCGCGTCGTTTGACACA
AACAGGAGCAGCACCCGAACTGCCGCGGCGGCTGCTGCTGCGGCACCCGGGCGCGCGTCC
ACGGACCACCGCGACCAGGTCAAGACGTTGGAGATCGACACTGCGCGGCCATTCTCCTAC
TCCACGCCTCGCCGGCATGCCCCACCGTCGCAGCACGGGAACGGCTCGCCGATGCACCGT
GCGCACCACCAGGCTTCTGTCACGCCGTCACCGGGGAAGGCGAGGCCACCGATCCAGGTG
CGCTCCGCGAGCCCGCGAGTGGAGCGCGGCACAGGCGGTGGAGGGGGCAGCTACACACCG
AGCTTGCACTCCCAGCGCCACGCGTCCTCCGGCTCGGTGGTGCCGAACTACATGGCGGCC
ACGGAATCTGCAAAGGCACGTATCCGCTCCCAGAGCGCGCCACGGCAACGCCCTGCAACC
CCGGAGCGCGACCGGCCACAGACCGCCTATAATAACCCCGCCGGAGGAAGCGCCAAGAAG
CGGCTGTCGTTCCCCGTCCCGCAGGACCCGTACGGCGTTGGGTACGCGCAAAGCCTGCGG
AGCCCGAGCTTCAAGAGCGCAACGGGGCGGTTCACCTCCGAGCAGCGCTCCACCGTGTCG
TCTCTGTCGTGCGCAGAGAGCATCGGCGGGGAACCAGTCTCCCCGTCGTCCACCACTGAT
CTCCGCCGCTGGCTCCGTTGAGTTGAATCGCCGGCGAGGTGTTCGTTGTAATGCCAGCGT
TTAATTGCTCTGCTAATTTTCTCGTAATCTCCTTGGCGATAAAAAAAAAAAAAAAAATCT
TTTTTTCTTCTTCTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_3150 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g02250.1	544	0.0	protein\|IQ calmodulin-binding motif domain containing protein, expressed
Brachypodium v1_2	Bradi3g13710.1	584	0.0
Arabidopsis v10	AT4G00820.1	534	2e-97	\| Symbols: iqd17 \| IQ-domain 17 \| chr4:349300-351307 FORWARD LENGTH=534