barSeed - Barley Seed Development Database

Probe CUST_38460_PI390587928

Source Contig U35_3157

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38460_PI390587928	Hv_44K_v2	AACTTGTGTATCGTTCACTGTCGAATCTTTCCCCAAATGTGAAATCTGCTTTGGCTCAAA	1324	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68002.1	1816	2e-23	38 - 95	100	58 / 58	minus	ABC31768
JLOC1	JLOC1_44956.1	1808	1e-23	1719 - 1776	100	58 / 58	plus
Harvest21	ABC31768	586	3e-25	15 - 74	100	60 / 60	minus	ABC31768
Harvest35	U35_3157	1398	3e-25	1325 - 1384	100	60 / 60	plus

Contig Sequence (1398 bp)

>U35_3157 1398 Hv_44K_v2
CTCCGTTAGAGCCCTGGTCCGACTCGGAGATCCCAACCCAGAATTCTTGAGCTCCTCATA
CAAATTATTAGGTCGTGCTTTTCGGCTTGCTTCTGTCTCCTTAGCTTTCCCCATTTATTG
TCTGCGAAATCTGAAGATTCCAACTGGTCAAGGAAGTGAAGAAGAACAAGGAGAGAAGGA
CATGGATGCTTTAAGTTCGATGCTCGACAAGGCGAAAGACAAGGTGAAAAGCAACCCTGA
TGTGATGGAAAAGGTCAATTCGGTTCTCGACAAGGTTAAGAACCACCCAGAAGTGATGGA
AAAAGTTGCTGAGGTTTTACATCTGGGAAAACGTGAATCCAAAGAGAAAGAGGCCGAGGC
CGAGGAGAAGACAAAGGAAGGCGAGACCTCTGCCGACAACACCCAAGACTCAAACATCCT
AGACCAGGCCGTGGAAGAAATTCAGGCTGTTGTGGCAGCTGTGCAGCAGCAGGAAACAAC
CGGGGATGAAACTCAAGTTCCAGTGGAGGCTGCTGCTGAAACTAATACTCCAGCTCAAGG
AGACAAGCCCGACGAAGTAAAACGGGAGGCAGAGAAAGACAACCCCAAGAACCGAATCGA
CTTCGTGGGCTTCTTCGCCATGATGTTTGAGAGGTTCTGCTCCCCAGCTGACAAGAAGAA
AGACTAGTTCCGTCTTCCGTGTGGCAGAGCTGCCGGATTTATCCATTTGTCTTCATGAAA
ACTGAATGGCCTGCATATGGGGTGCCTGTGGTGTGGATGGATGGTGTACAGTTTTGAGTT
GTGTGTTCTTTTGAGATTTATTTCATTTTGGGATTGTCCTTAATGTTGATGGATGCAACA
AAAAAAAATGTGTTTCATTTTTGTGTAATTATTGTCACTCCTACTCATGGATTTGATCCT
ATTTATGTGAATCAAAGGAATTAATTGAATTTCTTTTTGAAGGCAAAAAAAAAAAAAAAA
AAAAAAACTCAAGCCCTCCACCGGCGAGAGAAAGCCGCGAGTTCGAATTGGCAGCAATGT
CCAAGTCGAGGAGAAGCAGTGAAATGGAACATCTCTGAGGTTTACTGAAGCCAAATGAGA
TATCAAGAGCCTTCATGGCTCCAGAAGTTTTGACACCAGAATTCAACCTTGGCATCCGTC
ATTCTTCGCGCAATGCAACAGAGGAACTTTGCCAGTGCCGACGGGCTTTGCTTAAGCATC
AAAATACCCTAAGCTCCTTTATCAAACAAGCCAATGTACAATTTGTTCACTGCCGTGGTA
GTGGTACTACCGTAGCTGTATACTGGGATGTGATGTATATTTATTTTCCCTACATCATAC
TGTAAACTTGTGTATCGTTCACTGTCGAATCTTTCCCCAAATGTGAAATCTGCTTTGGCT
CAAAAAAAAAAAAAAAAA

Homology of Contig U35_3157 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None