barSeed - Barley Seed Development Database

Probe CUST_38459_PI390587928

Source Contig U35_3159

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38459_PI390587928	Hv_44K_v2	GCAAGAATTCCAAGAAAGTGAAAAACACCGATGCATCGTCGCCCAAGAAGGACAAAGATA	92	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4591.3	259	2e-24	117 - 176	100	60 / 60	plus	None
MLOC	MLOC_4591.1	1391	2e-24	294 - 353	100	60 / 60	plus	ABC08806 ABC08809 ABC31768
MLOC	MLOC_4591.2	3200	2e-24	249 - 308	100	60 / 60	plus	ABC08806 ABC08809 ABC31768
JLOC1	JLOC1_2881.1	1347	8e-25	225 - 284	100	60 / 60	plus
Harvest21	ABC08808	687	3e-25	93 - 152	100	60 / 60	plus
Harvest35	U35_3159	687	3e-25	93 - 152	100	60 / 60	plus

Contig Sequence (687 bp)

>U35_3159 687 Hv_44K_v2
CTCTTCTCCTCTGCTGCAACTCCTCTCCATTTTTCTCATCGTACCCAGCAAAGTAGTGTA
AGAGGAAGCACAGAACGAAATGTTTTTCCAGCGCAAGAATTCCAAGAAAGTGAAAAACAC
CGATGCATCGTCGCCCAAGAAGGACAAAGATAGCCGCGGGAAGAACGACTTCTTCGATCG
CGCCAAGGGAGGCTTTGGTGCCCTTGCAGGAAGCATCAAATCAGCCAAGAACGACGCTGA
AGACAGGGCAGCAAAGGTTCAAGAGGATGTGAACGCCGGCATTGAAGCAATCTTGGAGAA
GGGCTCAGGCATTCTTGAGAAAGCGAAGGAGGACGTTGGAGGCCAATCAGAAACAAGCCG
CTCAAAGGAACTAGGTCAAGGAAGTGAAGAAGAACAAGGAGAGAAGGACATGGATGCTTT
AAGTTCGATGCTCGACAAGGCGAAAGACAAGGTGAAAAGCAACCCTGATGTGATGGAAAA
GGTCAATTCGGTTCTCGACAAGGTTAAGAACCACCCAGAAGTGATGGAAAAAGTTGCTGA
GGTTTTACATCTGGGAAAACGTGAATCCAAAGAGAAAGAGGCCGAGGCCGAGGAGAAGAC
AAAGGAAGGCGAGACCTCTGCCGACAACACCCAAGACTCAAACATCCTAGACCAGGCCGT
GGAAGAAATTCAGGCTGTTGTGGCAGC

Homology of Contig U35_3159 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g41510.2	229	1e-67
Arabidopsis v10	None