barSeed - Barley Seed Development Database

Probe CUST_38457_PI390587928

Source Contig U35_3161

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38457_PI390587928	Hv_44K_v2	AATGAAGGCGCTCCAACATGATTATAGTGGGGACCTTATCGACCTTTCCGTTCCAAAAAA	586	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.079	2.652	2.442	0.949	0.381	0.576
Raw	3755.425	14656.753	11306.210	6247.297	963.396	1606.923

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_32637.1	942	2e-21	679 - 732	100	54 / 54	plus
Harvest21	ABC35438	615	3e-25	545 - 604	100	60 / 60	plus	ABC35438
Harvest35	U35_3161	658	3e-25	587 - 646	100	60 / 60	plus

Contig Sequence (658 bp)

>U35_3161 658 Hv_44K_v2
GTCCCCCGGCTGCGGNATTCGGCACCGGCTACATTCACATCGCTCGCTCCTACCTAGGCA
CGCACGCGCGGAGAAGAGAAGCAGCAGGCGCCATGGCCAAGATCTCCTTCCTCCTCCTGG
CGCTCCTCGTCCTCGCAGTCGCGTTCCCCGTGGACGTGATGGGAGGTGGTGGTGGTGGTG
GCGGCGGCGGCGGCGGCGGCAAGCTCAAGCCATGGGAGTGCTCGTCCAAGTGCTCGTCGC
GGTGCTCGGGGACGCAGTACAAGAAGGCGTGCCTGACCTACTGCAACAAGTGCTGCGCCA
CCTGCCTCTGCGTCCCGCCGGGCACCTACGGCAACAAGGGCGCCTGCCCCTGCTACAACA
ACTGGAAGACCAAGGAGGGAGGCCCCAAGTGCCCCTAGGTTCTAGATTTTGATTTTCTTC
TTCTGGGGTGCCAGCTTGCGGTTGATGGTTATTACTCGTCTATTAAGACGTTGCTAGATC
TGAATTATGCTGTTAATTTATGTGCCCGGCTATGGTGATGTGAAATTGAACATCAAACTT
TTGGGAGCTTAGTGGCATCTGTGTTTCTATCAGTAAGATGTGGAAGAATGAAGGCGCTCC
AACATGATTATAGTGGGGACCTTATCGACCTTTCCGTTCCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_3161 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g43850.1	95	1e-51
Arabidopsis v10	None