barSeed - Barley Seed Development Database

Probe CUST_38456_PI390587928

Source Contig U35_3162

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38456_PI390587928	Hv_44K_v2	GCTATTTTTTATTTTTTACCTGGGATGTTGGTGCTCTTCATAAGAATTTAGTTCGCTTCC	2640	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57282.1	2870	6e-24	2760 - 2818	100	59 / 59	plus	ABC08892
JLOC1	JLOC1_37101.1	2689	3e-24	2479 - 2537	100	59 / 59	plus
Harvest35	U35_3162	2717	3e-25	2641 - 2700	100	60 / 60	plus

Contig Sequence (2717 bp)

>U35_3162 2717 Hv_44K_v2
GGTTGAAATTCCACACGGCCTCTCTCTTCGCCTTCGCCTTCCCCCTCTCGTGCTCGCGAG
CCGCGTCAAAACCCTAGCCACCTTCTGCCCACCACATGCACCGCGGCAGCGACCGCTCCG
CCGACCCTTCAGGCCCCGCGGGCGCCGCTCGCAGCGGCGGGGACGGCAGATTCGCGCGCG
GACCCTCACGCTGGTCCGGCGGCGGCGGGGGTAGCCCCCCGCCCCACCGCTCCTCCCGCG
GCGGGAGCAGCGACGGCGGCGGAGGCGGAGGCGGAGGCGGGAGGTTCCATCCGTACCGTG
CGCCGTCTGAATACGTTGTTGGCGGTGGTGGAACTGGAGGGTACAGAGGCGGCGGCGGCG
ACTTTGATGAGACGGCCGGTGGAGCGAGGAGCCGTTACGGAGGCGGTGGCGGCGGAGGCC
GTGGAGACTACTCAGATCATGATAACAAAAGTGGTTATGTTAAACTTTTCGTTGGATCAG
TTCCAAGAACAGCAAATGAAGATGATGTTCGACCTTTATTTGAGGATCATGGAGATGTTC
TTGAAGTTGCTTTGATCAGGGATAGGAAAACTGGTGAACAACAAGGCTGTTGTTTTGTTA
AATATGCTACTTCCGAAGAGGCCGAGAGAGCCATCAGAGCTCTGCATAACCAGTGCACTA
TACCCGGGGCGATGGGCCCTGTTCAGGTTAGATATGCTGATGGTGAAAAGGAGCGTCATG
GGTCTATTGAGCACAAATTGTTTGTTGCATCACTGAATAAGCAGGCAACTGCAAAGGAGA
TAGAAGAGATTTTTGCTCCTTTTGGTCATGTGGAAGATGTTTACATCATGAAAGATGGCA
TGAGGCAGAGCCGAGGCTGTGGCTTTGTCAAATTCTCATCAAAAGAACCTGCACTTGCAG
CCATGAATTCTCTTAGTGGGACTTACATAATGAGGGGGTGCGAGCAACCATTAATAGTTC
GATTTGCTGATCCTAAGAGGCCTAGACCTGGAGAATCAAGGGGTGGCCCTGCCTTCGGAG
GTCCTGGTGTCAGTTCTCGATCTGATGCAGCACTAGTTATCAGGCCGACTGCCAATCTTG
ATGAGCAAATAGGTCGACACATGCCTCCTGACACTTGGCGTCCTTCAAGCCCAAGCTCAA
TGGCACCTCATCAGTTCAATAACTTCGGGTCTGACAATTCTATGGGCCTGATGGGTGGCC
CTGTTACATCAGCAGCAGATAATGTTGCTTTTCGGCCTCAGTTGTTTCATGGGAATGGTT
CTTTGTCAAGTCAGACAGCTGTGCCGGCATCGTCTCATATGGGCATAAATCCTTCCTTGT
CACAAGGGCATCATCTCGGTGGGCCACAGATCCCACCCTTGCAAAAGCCAACTGGCCTGC
AGCAGAATTTCCCTGTACAATTGCAGAATGCTCAGCAAGGGCAGCTTCATGCCTCACAAT
CCTTGGGGCCTGGTTCTTTTGGCCAGAATATACCAACTATGCAATTACCTGGCCAGCTCC
CTGTGTCACAACCATTGACGCAGCAAAATGCTTCTGCATGCGCTCTACAGGCGCCTTCAG
CTGTACAGTCCAATCCCATGCAATCTGTTCCTGGACAACAACAACTTCCATCCAATTTAA
CACCACAAATGCTACAGCAGCCAGTCCAGCAGATGCTGTCACAAGCTCCACAGTTGCTAC
TCCAACAGCAGCAGGCAGCTATGCAGTCCAGTTATCAATCTTCACAGCAGACGATTTTTC
AGCTTCAGCAACAGCTGCAACTAATGCAGCAGCAGCAGCACCAGCAGCAGCCTAACTTAA
ATCAGCAGCCACATACGCAGGTTCCTAAGCAACAGGGACAGCCAGTGCAATCTAATGCCC
CTGGTGCTCCGGCTGCCATGATGACGACAAACATAAATGCAATTCCACAGCAGGTCAATT
CGCCTGCAGTTTCTTTAACTTGCAATTGGACAGAACATACCTCACCTGAAGGTTTTAAAT
ATTACTACAATAGCATAACTCGAGAGAGTAAGTGGGAAAAGCCTGAAGAATATGTACTGT
ATGAACAGCAGCAGCAGCAGCAGCAGCACCAGAAACTTATTTTACTTCAACAGCACCAAC
AAAAGCTTGTTGCGCAGCAACTTCAGTCACCTCCTCAGGCTCAAACAATTCCATCTATGC
AATCTATGCAACACCATCCCCAGTCGCAGCAAGGACATAACCAAATGCAGATGAAACAGC
AGGATTTAAACTATAATCAGTTACAGCCAACGGGCACGATTGATCCCAGTAGGATTCAGC
AGGGAATTCAAGCTGCTCAAGAGCGTTCTTGGAAAAGTTGACTGCAGGTGGATGAATGAT
GTGTCAGCGAAGACTCCAGTCTCAGGAATGAGCTCCAGCAAGACCTGCCGCTTCTGCCTG
TGACGGTGTTTTTTGCCTTCGCGCGGATGGCCATGTTGGCTCTTGCGGTCATTGTAACTC
TGAATTTAGCTTAGATTAGTGCCTAGATTGTAGATCCGATGTGTGTAAAATGTTTGCAGT
CTAGGCCTTGTATCGCTGTAACATTGCCTATTAGAATGGCAGCTGTGTGTCGCTGTAACA
TTCAGTGTTTTTATCTACCTTTTTTATGGCCAGAGTTGCCGTCTCATATGCATTAGCATT
GCTATTTTTTATTTTTTACCTGGGATGTTGGTGCTCTTCATAAGAATTTAGTTCGCTTCC
AAAAAAAAAAAAAAAAA

Homology of Contig U35_3162 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g03610.4	728	0.0	protein\|flowering time control protein FCA, putative, expressed
Brachypodium v1_2	Bradi4g08727.1	739	0.0
Arabidopsis v10	AT4G16280.2	747	9e-102	\| Symbols: FCA \| RNA binding;abscisic acid binding \| chr4:9207164-9214412 REVERSE LENGTH=747