barSeed - Barley Seed Development Database

Probe CUST_38453_PI390587928

Source Contig U35_3165

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38453_PI390587928	Hv_44K_v2	GCTTTGACTGCCTCATACACACCTGCAATTTGGTGTGTTGTGTTACTGAACTTGTTCAGA	1626	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.231	1.089	1.122	0.882	0.405	0.368
Raw	45.301	36.513	32.337	42.385	5.477	4.920

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_40772.1	1907	8e-25	1756 - 1815	100	60 / 60	plus
Harvest21	ABC07708	1686	3e-25	1627 - 1686	100	60 / 60	plus	ABC07708
Harvest35	U35_3165	1686	3e-25	1627 - 1686	100	60 / 60	plus

Contig Sequence (1686 bp)

>U35_3165 1686 Hv_44K_v2
CCTACCACCGCTCTACTCCGCTTCGAGACCACAGCACCTCGCGCGCGCTCCACCCACCAT
AAGCCTTCCGGCCTTCAGGGAGCCCAAGCCATGGCGCGCAAGAAGATTCGGGAGTACGAC
TCCAAGCGCCTCCTCAAGGAGCACCTCAAGCGCCTGGCCGCCATCGACCTGCACATCCTC
TCCGCCCAGGTAACACAATCGACGGATTTTGCGGAGCTTGTAAACCAGCATCCATGGCTG
TCGACCACCAAACTGGTTGTGAAGCCTGACATGCTGTTCGGGAAGCGTGGGAAGAGTGGA
CTTGTGGCACTCAACCTGGATGTAGCCCAAGTCAAGGAGTTTGTGAAGGATCGGTTGGGA
GTTGAGGTTGAGATGGGCGTCTGCAAAGCTCCAATTACCACCTTTATAGTTGAGCCGTTT
GTCCCCCACGATCAAGAATACTATCTTTCAATTGTGTCCGAAAGGTTGGGTAGCACCATT
AGCTTCTCGGAATGTGGAGGCATTGAAATCGAGGAAAACTGGGACAAGGTTAAGACAGTC
TTTCTTCCGACTGAGAAGCCAATGACACCTGATGCTTGTGCTCCCTTGATTGCAACCCTT
CCATTGGAGGCACGCGGAAAGATTGGTGATTTCATTAAAGGAGTGTTTGCTGTCTTCCAA
GACTTAGATTTCTCATTTATTGAGATGAACCCATTCACCATGGTGAATGAGGAGCCATAT
CCTCTGGACATGAGAGGAGAATTGGATGACACTGCATCTTTCAAGAACTTCAAGAAGTGG
GGAAATGTAGAATTCCCTCTACCATTCGGCAGAGTTCTCAGTTCTACAGAAAGTTTTATC
CATGAGCTGGACGATAAGACCAGTGCGTCTTTAAAGTTCACAGTTTTGAACACAAAGGGA
CGCATCTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATATACGCCGACACAGTTGGA
GATTTGGGATATGCTTCAGAGTTAGGAAATTACGCAGAATACAGTGGTGCTCCCAACGAG
GAGGAGGTTCTGCAGTATGCTAGAGTAGTACTTGATTGTGCGACTGCGGACCCTGATGGC
CGCAAGAGAGCCCTTCTCATTGGAGGTGGTATAGCCAACTTCACTGATGTTGCTGCCACC
TTTAGTGGCATCATTCGGGCATTAAGAGAGAAGGAATCCAAGTTAAAGGCATCCAGGATG
TACCTCTATGTTCGACGAGGTGGTCCAAACTACCAAACTGGACTGGCGAAAATGCGCAAG
CTTGGTGCAGAAATCGGTGTTCCGATTGAGGTATATGGACCCGAAGCAACAATGACTGGC
ATCTGCAAGCAGGCGATTGAATGCATTATGGCAGCTTAATAAATCAGGATACAGTTGAGA
AGTTGTTTGCGATCTGCAAACAAGAAACTGGATGCGTCATGGCTGCCACATAAATGAGAG
CATAGTCGAAGTAGGATCACATCACATGGTTGATTAGCTTTTTCAGAAGTTATTTGAACA
GACAGACACATATATTGTTGTCGTAAAGGAACCTGTGCTGTTGTAATGTGACAAACAAAA
GATTTATTACCATGCAAACCGGCATATGTCTGTAGCCTTTTACAAGCACGGAATTGCAAT
GATCTTGCTTTGACTGCCTCATACACACCTGCAATTTGGTGTGTTGTGTTACTGAACTTG
TTCAGA

Homology of Contig U35_3165 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os11g47330.1	424	protein\|ATP-grasp domain containing protein, expressed
Brachypodium v1_2	Bradi4g09770.1	424
Arabidopsis v10	AT1G09430.1	424	\| Symbols: ACLA-3 \| ATP-citrate lyase A-3 \| chr1:3042135-3044978 FORWARD LENGTH=424