barSeed - Barley Seed Development Database

Probe CUST_38452_PI390587928

Source Contig U35_3166

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38452_PI390587928	Hv_44K_v2	TGGAAGGCTCTGCAGCTCCGATTGCTATATCATTTGAATGAACCATTCTTGAAACTCCGC	1036	GeneList: bisque4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.156	3.970	2.171	0.918	0.729	0.676
Raw	10.446	60.830	28.537	19.794	3.294	4.180

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360731	1096	2e-24	1007 - 1066	100	60 / 60	plus	ABC08034
MLOC	MLOC_5660.1	571	2e-24	299 - 358	100	60 / 60	minus	ABC08034
JLOC1	JLOC1_3656.1	1418	8e-25	1120 - 1179	100	60 / 60	plus
Harvest21	ABC08034	1108	6e-22	1037 - 1090	100	54 / 54	plus	ABC08034
Harvest35	U35_3166	1130	3e-25	1037 - 1096	100	60 / 60	plus

Contig Sequence (1130 bp)

>U35_3166 1130 Hv_44K_v2
CTAGTGGNATCCCCCGGNGCTGCAGGGAATTAAAACCGAGTGGGCCGACGTCGTCGCCCT
CCGCAGGTCAAGCTCGGCAGCTGCAGCTCCGCCTCGAAACCGAAGCCGCCGCCGGCAGCG
GGGGAGGAGGAGGAGGGTGATGGCGTCGGGCCTGGTGACGGAGGACGTGACGGTGGGGCG
GCTGGTCCGGATCCGGCGCACGGTGATGCACATGCTGCGCGACCGGGGGTACCTGGTGGT
GGAGCACGAGCTGTCCATGACCCGCCGCGACTTCCAGCGCAAGTACGGCGAGACCTTCCA
CCGCGAGGACATGCTCATCAACAAGTGCAAGAAGAACGACCCCAACGACCAGATTTACGT
GTTCTTCCCCAACGACGAGAAGGTGGGGATGAAGCACATCAAGAAGTACGTTGAAATGAT
GAACGCCGAGAAAGTCTCAAGGGCTATATTGGTTGTGCAACAGAACCTCACCCCATTTGC
GAAATCGTTCCTCCAAGAACTGGAGCCAAAGATCCACTTGGAGGTTTTCCAGGACGCCGA
AATGCTTATAAATATCAAGGAACATGTTCTTGTTCCGGAGCATCAAGTGCTTGCTAACGA
GGAAAAGAAGACGTTATTGGCGCGGTACACTTTAAAGGAAACTCAGCTACCAAGAATACA
GATTACGGATCCCATTGCGAGGTACTATGGCCTCAAGCGAGGGCAGGTGGTGAAGATCAT
CAGGCCCAGCGAGACAGCCGGCAGATACGTCACATATCGCTATGTTGTATGACAGTACAC
AAAGTGAAATCAAGGAACCAAGAACATGGTGATTTTTGCAGTTACACACATGACACATGA
CACACATACCCATTCGCTTGCTTGGAGAAAAACGGCATCGCTTCAAGCCGCCATTCTTAA
GGATCGTATGCCTGTTACGTAAGTGGATTTCTTAATAAGCCGAGTGTATGGAGCATAAGC
AAAATCCTCATGTTGTACCATTGTTTCAAGAACTTTATAGAACAATACAGAACAGAAACT
AGTGTGTTGAGAGCCATGGAAGGCTCTGCAGCTCCGATTGCTATATCATTTGAATGAACC
ATTCTTGAAACTCCGCAGCCGGCAGCTCCGGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_3166 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g59140.1	211	5e-123	protein\|DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed
Brachypodium v1_2	Bradi2g52777.2	211	4e-132
Arabidopsis v10	AT3G22320.1	205	2e-87	\| Symbols: ATRPABC24.3, RPB5A, NRPB5, NRPD5 \| Eukaryotic rpb5 RNA polymerase subunit family protein \| chr3:7891045-7892094 REVERSE LENGTH=205