barSeed - Barley Seed Development Database

Probe CUST_3844_PI390587928

Source Contig U35_128

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3844_PI390587928	Hv_44K_v2	TAGTAGTAACTGCATGGTGACTGGTGATCTCTTGACGCAGCGGCGCCTTTCCTGCGGTAC	413	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.316	0.818	2.236	2.507	0.828	0.886
Raw	2.911	20.212	49.172	83.291	9.745	11.719

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC07524	630	3e-25	414 - 473	100	60 / 60	plus
Harvest35	U35_128	630	3e-25	414 - 473	100	60 / 60	plus

Contig Sequence (630 bp)

>U35_128 630 Hv_44K_v2
GAGGGTCGCTCCAGCCATGTGCCCCTCCGCTGGATCTCCCTACTAGATAATATCTTATCT
CGCCGAGAACGACGGCAGGGCAGGGCGCGCGGTATAAGTCCAGCTGCTGGCGGCCGCCGT
CTCGATCGACACAAAGAGAGAGAGAGAGAGAGATCTGATCTTTCTTGAAGAGGATGGCGC
ATGGCAGAGGCAGTTGCCGGCGGCTGCATGCGCGTCTACTCGCGGTGGTCGGGCTCCTCG
CCTGCGCCGCCTTCGCGCCGCGCTCCTCGGCTCTCAACGTCGGCCTCCAGTCCGTCGACG
CCGACGGCGATGGCGTGAGCAAGCAGCAGGCGTGCAGCCGAACGTGCGAGTCCGACCACT
GCACGAGTACGTAGGCGCATCAACTTCTTCTTCTTCTTCTTCTTCTTCGTTGGTAGTAGT
AACTGCATGGTGACTGGTGATCTCTTGACGCAGCGGCGCCTTTCCTGCGGTACGGCAAGT
ACTGCGGCATCCTCTACAGCGGGTGCCCCGGCGAGCGCCCGTGCGACGCCCTCGACGCCT
GCTGCATGCACCACGACAACTGCGTCCTCGTCAAGAATGACTACCTGAGCACGGAGTGCA
ACGAGGGCCTGCTGGAGTGCCTGGCGGAGC

Homology of Contig U35_128 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None