barSeed - Barley Seed Development Database

Probe CUST_38446_PI390587928

Source Contig U35_3174

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38446_PI390587928	Hv_44K_v2	TACCCAGGTGAACTGAACGAGTCTGATTATGGAAATTATGGTGCATCAGCTCATTCAGAT	631	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370060	1287	7e-23	648 - 707	98	59 / 60	plus	ABC07692 ABC07693
MLOC	MLOC_56439.3	951	7e-23	679 - 738	98	59 / 60	plus	ABC07692 ABC07693
MLOC	MLOC_56439.2	1263	7e-23	627 - 686	98	59 / 60	plus	ABC07692 ABC07693
MLOC	MLOC_56439.4	881	7e-23	588 - 647	98	59 / 60	plus	ABC07692 ABC07693
MLOC	MLOC_56439.1	1433	7e-23	797 - 856	98	59 / 60	plus	ABC07692 ABC07693
JLOC1	JLOC1_36500.1	1320	4e-23	633 - 692	98	59 / 60	plus
Harvest21	ABC07693	1128	1e-23	558 - 617	98	59 / 60	plus	ABC07693
Harvest21	ABC07692	622	1e-23	540 - 599	98	59 / 60	minus	ABC07692
Harvest35	U35_3174	722	3e-25	632 - 691	100	60 / 60	plus
Harvest35	U35_3175	1231	1e-23	558 - 617	98	59 / 60	plus

Contig Sequence (722 bp)

>U35_3174 722 Hv_44K_v2
CAAACGTAGCCGTCAGCAGAACAGCAGGTGATGGCCGGCGGGAGCCTGGACCTCCCCGTG
GTTGACCTCGCGTCCCCCGACCCCCAATCCGCTGTGGCCGCCGTCCGGAAGGTTGCTCGC
GTGATTTCTCTATTTTGTGGAGCCACCAAGAAGCGTCACGCCGTGTGCGATTTGGTTTGG
TTTACAGGCATGCGTGGAGAGCGGGTTCTTCTACGTCACCAACCACGGGATCCAGGACGG
CCTGCTGGAGGCGTTGTTCGCCGAGAGCAAGAAGTTCTTCGAGCTGCCACTGGAGGAGAA
GATGCTGCTGCAGAGGAACAGCAGCCACCGGGGCTACACCCCGCCCTACGCCGAGAAGCT
CGACGCGTCTTCCGAATTCCAGGGTGACCTCAAGGAGAGTTTCTACATTGGGGCGGTCGG
GGACGTAGATATGCCGAATGATCCTAACCAATGGCCTCCCAAAGAGCGCTTTCCATCTTG
GAAGGATACAATGAAGCTGTACCATGAAGCTGCACTGGCTGCTGCCAAAAAGATTCTCTC
TCTAATTGCTCTGAGTCTGGACCTAGAAGCTGAATTCTTTCAGAACATTGGTGCAGTCAA
CTGCTCTTCAGAAGTTATTCGGCTATTGCACTACCCAGGTGAACTGAACGAGTCTGATTA
TGGAAATTATGGTGCATCAGCTCATTCAGATNATGGAATGATNACTCTTCTTGTAACAGA
TG

Homology of Contig U35_3174 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g37899.1	545	1e-74	protein\|transposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi3g31570.3	312	4e-86
Arabidopsis v10	None