barSeed - Barley Seed Development Database

Probe CUST_3843_PI390587928

Source Contig U35_19960

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3843_PI390587928	Hv_44K_v2	AGGAGGGCCCTACTACGCGGTGAAGAAAGGAAGGAAAGACAGCAAGGTGTCCCTGGCTGG	600	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.801	1.850	1.512	0.458	0.186	0.175
Raw	76.002	113.974	88.344	41.017	5.073	5.753

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356012	1262	2e-24	602 - 661	100	60 / 60	plus	None
MLOC	MLOC_78414.1	914	2e-24	813 - 872	100	60 / 60	minus	None
JLOC1	JLOC1_52262.1	1031	8e-25	813 - 872	100	60 / 60	minus
Harvest21	ABC15305	658	3e-25	598 - 657	100	60 / 60	plus
Harvest35	U35_19960	662	3e-25	601 - 660	100	60 / 60	plus

Contig Sequence (662 bp)

>U35_19960 662 Hv_44K_v2
ATGCCAGCCGCGCCAGCGCTAGAGACTAGGAGATAAGCCAAGCTAGCCGCTCTTCCGGTC
GTCTCCACTCCACTCCCCTTCTTCTTCTTCTTCCATGACAATGGGTTCCTCCGGAGGCAT
CCGCTTCCGCAGCCTTGTCTTGCTGCTCGTCGCGTACCTCGGCGGCACGCGCGCTCGGGA
GGCGCCGCTGCCGTTGCCGTCTGCCAGTGCCAGGACCGCGGGAGTTGCCAACAGGCGGGC
GCCGGAGCGGCACGGGCTGTCGCTGGACTTCTACGGCAAGACGTGCCCTGCGGTCGACCA
CATCGTCGCCAACGTGACCGCCGAGCGGTTCCGCGACCACCCGGCTGCCGGGCCCGCCGT
GCTCCGCCTCTTCCACCACGACTGCTTCGTGGAAGGCTGCGACGCGTCCATACTGATCGC
GCCGGCAGGCAAGGCGGCAGGCGAGAAGGTGGAGAGGGACATGGAGGAGAACAGGAACCT
GCCGCAGTACGGGTTCGAAACGGTGGAGATGGCCAAGGCCGCCGTGGAGAGCAAGTGCCC
CGGCGTCGTCAGCTGCGCCGACATCCTCGCCCTCGCCGCCCGAGACGCCGTGCAGCTGGC
AGGAGGGCCCTACTACGCGGTGAAGAAAGGAAGGAAAGACAGCAAGGTGTCCCTGGCTGG
CA

Homology of Contig U35_19960 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g46050.1	368	4e-97
Arabidopsis v10	None