barSeed - Barley Seed Development Database

Probe CUST_38438_PI390587928

Source Contig U35_3182

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38438_PI390587928	Hv_44K_v2	GTAGTTTATCGAAACAATGGTGCTTCTTGTCCTTGCAATTGATCCTAATATGCAATCAAA	1198	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12843.3	563	7e-23	485 - 541	100	57 / 57	plus	ABC07863
MLOC	MLOC_12844.1	4061	7e-23	2132 - 2188	100	57 / 57	plus	ABC07863
MLOC	MLOC_12843.2	1319	7e-23	1200 - 1256	100	57 / 57	plus	ABC07863
Harvest21	ABC07863	770	3e-25	15 - 74	100	60 / 60	minus	ABC07863
Harvest35	U35_3182	1272	3e-25	1199 - 1258	100	60 / 60	plus

Contig Sequence (1272 bp)

>U35_3182 1272 Hv_44K_v2
TCGGGAGCCACTGGAGCTACGAAGTAGGAACGCCTCTTGTTCCATATCCACGGCTTTGAT
CCGTCCGACACACCACCCACACGCCCCAGCGGAACAGCAGCAGCTAAGGAGCGAAGGACC
CTCATCGCCGGCAGCAGTCAGGCCAGCAAGGCATCAGCCAGCCGAGTCCGGCGACGGCCA
TGGCGTTAGCAGCTAACGCACATGGAAGAGTCTGCACCCTCTCCTCCAGGCCGCCCGCGC
CTTTCAGCAGCAGGAGCACGGTCGCTATGCCTGGGCACCATTCTGAGTCGCCGCGAGCCC
GGTTTGCTGTCCGGGCCATCGCGGAGCGCGCGACCTGGCTGCCGGGGCTGGACCCGCCGG
CGTACCTCGACGGCACGCTGCCTGGTGACTACGGGTTCGACCCCCTGGGCCTCGGGGAGC
AGCCTGAGGACTTGAAGTGGTACGTCCAGGCCGAGCTCGTGCACTGCCGGTTCGCCATGG
CAGGGGTCGCCGGCATCCTCGGAACCGATTTGATCCGTGTGTCAGGAATCGGCAACCTAC
CAGTGTGGTTTGAAGCAGGTGCCACGAAATTTGACTTTGCCAACACCACAGCACTCTTCT
TTGTCCAGCTTCTCTTGATGGGATTTGTCGAAACCAAGAGGTACATGGACTTCGTTAGTC
CAGGATCACAAGCAAAGGAAGGGACATTCCTTGGTATAGAAGCTTCACTTGAAGGTTTAC
AGCCAGGGTACCCTGGGGGTCCACTATTTAACCCAATGGGGCTGGCCAAAGATATAGAGA
ATGCGAATGAAGTGAAGCTGAAAGAAATCAAGAATGGGAGGTTGGCGATGGTTGCTATGC
TTGGCTTTATTGTGCAAGCGTCCGTGACTCATGCTGGGCCCATCGATAATCTTTTGACCC
ATCTTTCAGACCCGTTCAACAAAAATATCATTCATGCACTAACCTTGTCTTGAAAACTCT
TTGTCTCGAAACTTCGTTTATTTTCCCTTGTCCTCATCTGAAGGTGTGGCACAACAGACC
ACTATGGTTTCTTACAGGAAGCGCATTTCTTCTCAGGTCCCTTCGTTTGCAAGGTTCTAT
TAGTCACAAAACTGAATGTGGAACTTACGTGGGAGGAACTATAAAAAACTTACTACACAG
TTGACAGTACAGGTGCGGTGACAAATTGATTTTCTTCAAATGCAAATAAGATACATTTGT
AGTTTATCGAAACAATGGTGCTTCTTGTCCTTGCAATTGATCCTAATATGCAATCAAAAA
AAAAAAAAAAAA

Homology of Contig U35_3182 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g52650.1	262	4e-146	protein\|chlorophyll A-B binding protein, putative, expressed
Brachypodium v1_2	Bradi3g58020.1	260	1e-151
Arabidopsis v10	AT1G45474.1	256	1e-112	\| Symbols: LHCA5 \| photosystem I light harvesting complex gene 5 \| chr1:17179353-17180439 FORWARD LENGTH=256