- Probe CUST_3842_PI390587928
- Source Contig U35_19961
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3842_PI390587928 | Hv_44K_v2 | AAAGCATGCTGAAGAAAGCCTCAAGCAGTTTCAGGAGCAAAACCTCCCAGGTTTTTTGCT | 324 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.824 | 1.379 | 1.157 | 0.830 | 0.568 | 0.575 |
| Raw | 24.342 | 23.455 | 21.111 | 20.015 | 4.465 | 5.619 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_74748.1 | 3932 | 2e-24 | 472 - 531 | 100 | 60 / 60 | plus | ABC07846 ABC19048 |
| JLOC1 | JLOC1_49835.1 | 3892 | 8e-25 | 425 - 484 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_7640.1 | 4193 | 6e-21 | 486 - 544 | 97 | 57 / 59 | plus | |
| Harvest35 | U35_19961 | 545 | 3e-25 | 325 - 384 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_27497 | 500 | 2e-21 | 354 - 412 | 97 | 57 / 59 | plus |
Contig Sequence (545 bp)
>U35_19961 545 Hv_44K_v2 CTTTTTTTTTCCTTTTTCTTTTCCCCAGATTTCCTCCCTCCCCTCTCCCCTCCTCCTCTC GCAGGCTCCCTCACCGCCGTCGCCGAATCGCGGAGCTCCCGCGCCGCCCAATCGCAGGGC TCGCCCCGTCGCCCAATCGCAGAGCTACCGCCTCGGCTCCATCCCGCGACCTTGGACGTC TGAAGCTCCGTCGCGCCGTCCAGCTCCGTCACACCCGTCGTCGCCAACTACCTCCCCATC TCAGCAGCCAGCAAGAAGAGTCAGCATGTCGTTGGATGTTACTCAAATACTCTTGAGTGC GCAATCTGCTGATGGCTCGATTAGAAAGCATGCTGAAGAAAGCCTCAAGCAGTTTCAGGA GCAAAACCTCCCAGGTTTTTTGCTCTCCCTCTCAAGTGAGTTGGCCAACAACGAGAAACC TGAGGAGAGCCGCAGGTTGGCTGGTTTGATCCTCAAGAATGCGCTGGACGCAAAGGAGCA GCACAGGAAGAATGAACTTTTCCAGAGATGGCTGGCACTGGATGCTGGTGTCAAGGCACA GTGAA
Homology of Contig U35_19961 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |