barSeed - Barley Seed Development Database

Probe CUST_38410_PI390587928

Source Contig U35_43903

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38410_PI390587928	Hv_44K_v2	GTCACAAATTGGAGATCCCCAAGCACATTTTGGTCTCCTAAATCATCCACAAAATCTGTT	530	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34456.1	1253	2e-24	945 - 1004	100	60 / 60	plus	ABC41174
MLOC	MLOC_34456.5	2732	2e-24	802 - 861	100	60 / 60	plus	ABC41174
MLOC	MLOC_34456.4	1714	2e-24	802 - 861	100	60 / 60	plus	ABC41174
MLOC	MLOC_34456.8	1543	2e-24	615 - 674	100	60 / 60	plus	ABC41174
MLOC	MLOC_34456.7	2499	2e-24	615 - 674	100	60 / 60	plus	ABC41174
MLOC	MLOC_34456.2	3231	2e-24	1796 - 1855	100	60 / 60	plus	ABC41174
MLOC	MLOC_34456.3	3898	2e-24	2463 - 2522	100	60 / 60	plus	ABC41174
MLOC	MLOC_34456.6	2014	2e-24	589 - 648	100	60 / 60	plus	ABC41174
MLOC	MLOC_34456.10	1961	2e-24	576 - 635	100	60 / 60	plus	ABC41174
MLOC	MLOC_34456.9	2039	2e-24	576 - 635	100	60 / 60	plus	ABC41174
JLOC1	JLOC1_22219.5	1807	8e-25	859 - 918	100	60 / 60	minus
JLOC1	JLOC1_22219.4	1716	8e-25	768 - 827	100	60 / 60	minus
JLOC1	JLOC1_22219.3	2290	8e-25	1342 - 1401	100	60 / 60	minus
JLOC1	JLOC1_22219.2	3973	8e-25	1342 - 1401	100	60 / 60	minus
JLOC1	JLOC1_22219.1	3399	8e-25	768 - 827	100	60 / 60	minus
JLOC1	JLOC1_22218.2	1881	8e-25	917 - 976	100	60 / 60	plus
JLOC1	JLOC1_22218.1	1862	8e-25	898 - 957	100	60 / 60	plus
Harvest21	ABC41174	593	3e-25	531 - 590	100	60 / 60	plus	ABC41174
Harvest35	U35_43903	593	3e-25	531 - 590	100	60 / 60	plus

Contig Sequence (593 bp)

>U35_43903 593 Hv_44K_v2
TTTTTTTTTTTTTTTTGAAACAAAACAAAAACATAGTTGTGGCTAGCAATGGAGACACCC
GGCAACAATACAGCAAGAACAAAGCTATCCAGCAATGTAGGGATGTAAATTTTAGTACAG
GCAATCTGAGTGTGATTTGTCCAGACTCCAGAGAGCACTTGACACATCAACATCATGGCT
TCTTTTTTTCGGAAAAACTTCATGTCTTCAAGACCCATGATGGCAAAATCATTGACTAGG
GTTCCTGCTGACATACGAGATGTTGACTGGATGACCAAGCTACAGAGCTGTGGGTATGTT
TCTGAAAGAAACACCATATGGGTTCTTGAAGGAATCCTCTATTACCTTCATAATGTGCAT
GCGATGCAAGTCCTCGAAACCATTGCGGCATGCCGCACCTCAGCCTGCACGGTCCTCCTT
GCTGACTTTATGAACAAGAATGCTGCGTCACTGTCGCAGACGATGTACCATTTCTACCAC
GACAGCCCTGATCTCCTGCTGCCTTCTATGGGGTTCTCAAAAGCAATGTTGTCACAAATT
GGAGATCCCCAAGCACATTTTGGTCTCCTAAATCATCCACAAAATCTGTTCGA

Homology of Contig U35_43903 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g56370.1	346	1e-71	protein\|methyltransferase, putative, expressed
Brachypodium v1_2	Bradi1g07120.1	341	1e-74
Arabidopsis v10	None