barSeed - Barley Seed Development Database

Probe CUST_3840_PI390587928

Source Contig U35_14341

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3840_PI390587928	Hv_44K_v2	TTCTGAGTGCAATGTTCGTGTAGCAATAAAGAGACGGAGCTCTTGATCGTCGTCAAAAAA	581	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.770	3.644	1.595	0.605	0.180	0.217
Raw	1063.551	2216.329	860.280	536.527	52.815	72.133

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC02111	476	2e-22	404 - 465	97	60 / 62	plus	ABC02111
Harvest35	U35_14341	655	3e-25	582 - 641	100	60 / 60	plus

Contig Sequence (655 bp)

>U35_14341 655 Hv_44K_v2
GGCGCGCACACCATCGGGCGGTCGCAGTGCGGCAGCTTCGTCGACCGGTCCAAGCGCGCG
GACGACACCTTCTCGAGGAAGCTGGCGGCCAACTGCAGCAAGCACCCGGACCGGCTGCAG
AACCTGGACGTGATCACCCCGGACCTGTTCGACAACGGGTACTTCAAGGCGCTCGGGTTC
AACCAGGGGGTGTTCACCTCCGACATGGCGCTCGTCAAGAACAAGACCACCGCGCCCATC
GTGAAGCGGTTCGCGGAGAGCAAGGAGGCCTTCTTCGGGCAGTTCGCCAGGTCCATGGAG
AAGCTCGCCAGGGTGCCCAAGCCGGCGGGCAACGTGGGCGAGATCCGCCGCTTCAGCTGC
TTCAGGCCCAACGCCCAGCTCGCCGATGCTGCCGTGGACGACGCCGCCGGTGTGGAGGAG
GAGGGCTTCGCCGCCTCCGCCTGATCTGATCTGATGGCTCGGTCAAGTACGTAGTACGCG
CGTGCGTCAGGTCGTCGTCGGCAAGCAGGCTAGCTGCCCGTGCGTTGTGCTAGCGTGCAT
GCAGGGCATGGCCATGTTTGAGTTCTCGGCTTGCTTCTTTTTTCTGAGTGCAATGTTCGT
GTAGCAATAAAGAGACGGAGCTCTTGATCGTCGTCAAAAAAAAAAAAAAAGAAAA

Homology of Contig U35_14341 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g59260.1	339	9e-51	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi5g27220.1	339	1e-63
Arabidopsis v10	None