barSeed - Barley Seed Development Database

Probe CUST_38409_PI390587928

Source Contig U35_29610

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38409_PI390587928	Hv_44K_v2	ACACGCTCAAGAAGAAGTCAAGATCGAGAGGGCCAAGCCGGTCTCGTCGTGGCAGTTCTA	1	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356832	1845	7e-23	734 - 794	98	60 / 61	plus	ABC26551
MLOC	MLOC_57773.1	1713	7e-23	96 - 156	98	60 / 61	plus	ABC26551
JLOC1	JLOC1_37499.1	1366	4e-23	96 - 156	98	60 / 61	plus
Harvest21	ABC28976	403	3e-25	2 - 61	100	60 / 60	plus
Harvest35	U35_29610	403	3e-25	2 - 61	100	60 / 60	plus

Contig Sequence (403 bp)

>U35_29610 403 Hv_44K_v2
GACACGCTCAAGAAGAAGTCAAGATCGAGAGGGCCAAGCCGGTCTCGTCGTGGCAGTTCT
ACGACCGCCTTGACGTGCTCCTCGCGCCCACCTACAACCAGAAGCCGGCCGCCCACCCTA
ACGGACGGAACGCGGTGCCCACGGCGCTGCGCGCGGGATTCCCCCAGCGCAGCCGCACGC
CGCTGATGCCCGCCACGGCGCCCGTCAAGCGGAGGGCGCCGTCTCCGGAGATGTCGGCTT
CGTCCGAGTCGTCCGACGGGTTCCCGCCGGAGCCCGCGCTCCCGCCGGCGAATGGCAAGA
GGAGGAGGACGGACGAGGGGCGCGTGGATGGCTTAAGCGGCGGTGACCGCTCTCACGGCA
TGCGGGAGCTATCGCAAGCGATACGGCGCCTTGGCGAGGCCTA

Homology of Contig U35_29610 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g11070.1	419	3e-62
Arabidopsis v10	None