- Probe CUST_38401_PI390587928
- Source Contig U35_29616
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_38401_PI390587928 | Hv_44K_v2 | AACGTAACGAGCGTTACATTGCCACCACTTCTTTAAAGTTAGCTGATTCTTAGTAAAAAA | 316 | GeneList: orangered4 MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.804 | 2.615 | 0.959 | 0.903 | 0.966 | 0.715 |
Raw | 15.731 | 33.477 | 11.324 | 17.301 | 4.984 | 3.139 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_12904.1 | 1735 | 9e-22 | 17 - 71 | 100 | 55 / 55 | minus | ABC28982 |
Harvest21 | ABC28982 | 387 | 3e-25 | 317 - 376 | 100 | 60 / 60 | plus | ABC28982 |
Harvest35 | U35_29616 | 387 | 3e-25 | 317 - 376 | 100 | 60 / 60 | plus |
Contig Sequence (387 bp)
>U35_29616 387 Hv_44K_v2 CTCACATATCAGGTTAGTGTATGTTGCTGTCTTGTTTTTTGGCTCCTCTGAATGAGAGTG GGCCTCCCTACATTAAAGGCGTGTTCGGAGTCCCTCCACTCCACCACTCCGCTCGAGGAG CGGGTGGAGCTGCAGTTCAAAACTGTGGAGCGGGTCAATAGACACTCCGCAGATCCTTGA ATTCCAGGGAGCCGGTTGATTGCCGAACAGCCCCTAAGATCAGCTGCATGTAATATTTGC ATGTACTTACATTTTCTATGTTTTGTCGGTGTAGTCCCGGTTTCTATGATTTGAAGTCAG TGGTGAGACTTGTTGAAACGTAACGAGCGTTACATTGCCACCACTTCTTTAAAGTTAGCT GATTCTTAGTAAAAAAAAAAAAAAAAA
Homology of Contig U35_29616 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |