barSeed - Barley Seed Development Database

Probe CUST_38396_PI390587928

Source Contig U35_31930

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38396_PI390587928	Hv_44K_v2	AGGTGCTTTGTTTGTTGTCCTAATTGTTTTGGTGGTAATTCCTGGAGTTGCACTTCTGGT	425	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64437.2	2132	2e-24	506 - 565	100	60 / 60	plus	ABC13806
MLOC	MLOC_64437.1	2391	2e-24	737 - 796	100	60 / 60	plus	ABC13806
JLOC1	JLOC1_42312.1	2131	8e-25	495 - 554	100	60 / 60	plus
Harvest21	ABC47797	571	3e-25	418 - 477	100	60 / 60	plus
Harvest21	ABC19326	1112	3e-25	671 - 730	100	60 / 60	plus
Harvest35	U35_31930	485	3e-25	426 - 485	100	60 / 60	plus
Harvest35	U35_7544	859	3e-25	418 - 477	100	60 / 60	plus

Contig Sequence (485 bp)

>U35_31930 485 Hv_44K_v2
TCGAGCACTGTTGGCCTACTCACCACGCCATTACTTCGGCGCCCCGCCCCGCCCTCCTCC
AACCGCCACCTCCCTCCGCGATCTCGCCGCGCGATCTCCGACCGCCCAGCCGCCCACCGA
GCCCCCGCGGGAGGAGCCTCGAGCCGTCGCCCCGGGCGTCCCATGGTGGGGCCAGCACAT
CGGGGCCGCGAGATCTAGGGTTTTCGCGCCGCGGCGGGAGCGATGGGGCGCCGGAAGGCC
ACGGCGCCGGGGCCGGCCCGGGGCTCTTCGAGGGCCGGGGACGGCGTAATCTCCGAAATC
CGTGAGAAACATAAATTGGAACTGGAGAATTTGACACTAACAAAGCACCCATTCAAGACA
TTGCACTTTTTCATGTTAGCTATGTTGCAATACTTGAAAAGATCAGCAGCATATATCCTG
AGTAAAGGTGCTTTGTTTGTTGTCCTAATTGTTTTGGTGGTAATTCCTGGAGTTGCACTT
CTGGT

Homology of Contig U35_31930 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None