barSeed - Barley Seed Development Database

Probe CUST_38395_PI390587928

Source Contig U35_31931

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38395_PI390587928	Hv_44K_v2	TTACAGTATGAACTTTTTGCTGATAGGAATGCACTCGGTCAACGCTGTTTTCCTGCTCGG	318	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.069	0.151	1.066	3.017	1.493	1.362
Raw	3.485	16.387	108.379	493.264	85.208	83.918

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369336	2011	2e-24	1369 - 1428	100	60 / 60	plus	None
MLOC	AK373198	1630	2e-24	919 - 978	100	60 / 60	plus	None
MLOC	MLOC_12477.4	2133	2e-24	1442 - 1501	100	60 / 60	plus	None
MLOC	MLOC_12477.3	1843	2e-24	1442 - 1501	100	60 / 60	plus	None
MLOC	MLOC_12477.1	1701	2e-24	883 - 942	100	60 / 60	plus	None
MLOC	MLOC_12477.2	1696	2e-24	883 - 942	100	60 / 60	plus	None
JLOC1	JLOC1_8372.1	1740	8e-25	893 - 952	100	60 / 60	plus
Harvest35	U35_31931	433	3e-25	319 - 378	100	60 / 60	plus

Contig Sequence (433 bp)

>U35_31931 433 Hv_44K_v2
CTTCTACTACTACACCCAGTGGACCTTCATTCTGGTGACGGTTTACTTCGGGCTTGCGAC
GACGCTTTCGATCTACGGGTGCAGCAAGTTCGCCGCCTGCAATGCCGTCGCGGCGATGTC
CGACGCCGAGCAGGGGCCTTACGCCATCCACGGAGCCGCCCCGAAGCCGGTCGTCGACGG
GGAGGACGACGGCACGAGGGAGGTCGCCGGGTTCTGGGGGTACCTGCTGCAGATCATCTA
TCAGACAAATGCAGGAGCCGTGATGCTTACAGACTGTGTCTTCTGGTTCATCATTTTTCC
ATTCCTCACCGTCAAAGATTACAGTATGAACTTTTTGCTGATAGGAATGCACTCGGTCAA
CGCTGTTTTCCTGCTCGGCGAAGCATCGCTAAATAGCCTGCGCTTCCCGTGGTTCCGGAT
CGCGTATTTCTTC

Homology of Contig U35_31931 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g03790.1	363	5e-79	protein\|expressed protein
Brachypodium v1_2	Bradi3g02880.1	356	2e-89
Arabidopsis v10	None