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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_38386_PI390587928Hv_44K_v2TACATATATCATTTCATCCTATGTAATGTGATCCTTGGAGTAAGGGCCCCACGGAACTCG860GeneList: salmon
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 4.6463.4030.6710.4411.0100.899
Raw 31.96436.7484.7743.7543.2683.218



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC075229233e-25861 - 92010060 / 60plusABC07522
Harvest35U35_176449233e-25861 - 92010060 / 60plus



Contig Sequence (923 bp)

>U35_17644 923 Hv_44K_v2
AGAATACAACAGCAACAGCCATGGCCACCGCGACCTCCTTATCCCTCCACGGCCATGGCC
TCCCTTCCCCGACCGCAAAGACGCCCACGCGGAGGGTGCTCTCCGTCAGGGCCATGGCGC
CACCCAAAGGTGAAGCTGCTGCGGTGGAGAGCTCGCCTTCCCCGCGGCGGCAGGTGCTCG
TGGCGGGGGCTGCCGTGGCCGCCGCGGCGCTCGTCTCCCGGCCCGCTCCGGCGGCATTGG
CGGCGGCGGACGGCAAGTTCATGCCGGTCATCGACAGGAAGGCCGGCTACTCCTTCGTCT
ACCCATTCGGATGGCAGGAGGTGTCTGTCCAAGGGCAGGACAAGGTGTACAAGGACGTCA
TCGAGCCGCTTGAGAGCGTCAGCATCAACATGATCCCCACCACCAAGGAAGACATCCGTG
ACCTCGGCCCGCCCGACCAGGTCGCCGAGGCACTGGTGCGGAAAGTCCTATCTCCGCCCA
CGCAGAAGACCAAGTTGATCGAGGCGAAAGAGACCGATATCGATGGAAGAGCTTATTACA
CTTTTGAGTTCACGGCTCAGGCTCCAAATTTCACTAGACACGCGCTTGGTACAATTACCA
TAGCAAATGGCAAATTTTACACGTTGGCAACGGGTGCAAACGAGAGGAGATGGGACAAGA
TGAAGGACAGGCTACATACAATCGTCGACTCTTTCAAAATCGAAACAAAAGTGTGAGCGA
TGTTTGAGGCATTGTGCTGATTTTCTTTGTTTTTAGTTTGTTCGTTTTTGGAGCTACAGC
TGGCGCGAGGTTCAAAAGTAAATGTCGGGAATACAGATTCTACTGATCTTTTTCTTTTCT
TTCAAATACTCTGGTCTGCATACATATATCATTTCATCCTATGTAATGTGATCCTTGGAG
TAAGGGCCCCACGGAACTCGTCC



Homology of Contig U35_17644 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os10g32400.22013e-90protein|PsbP, putative, expressed
Brachypodium v1_2Bradi1g77047.12384e-102
Arabidopsis v10AT3G55330.12302e-75| Symbols: PPL1 | PsbP-like protein 1 | chr3:20514031-20515275 REVERSE LENGTH=230