barSeed - Barley Seed Development Database

Probe CUST_38381_PI390587928

Source Contig U35_43910

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38381_PI390587928	Hv_44K_v2	GATAACGACCTAGTCAAACTGTCAAAGATTGCACGATTATCCTGTTGTGAAATTATATCT	417	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_50821.3	568	2e-24	14 - 73	100	60 / 60	minus	ABC16516
Harvest21	ABC41189	477	3e-25	418 - 477	100	60 / 60	plus
Harvest35	U35_43910	477	3e-25	418 - 477	100	60 / 60	plus

Contig Sequence (477 bp)

>U35_43910 477 Hv_44K_v2
CCGAAGCGGAGGAGGGGTGTGTCTCTGCTCCGTCGCCGATCTCGCCTCCGCCGCGAATCC
CCCACCGGAAACGGCGAGCAGATTCGCGCCGGGCTCGCGGCGATCTTTGATGAGATAAGC
CCCCGGCCACCTCGGGGTTCGCGATGCTGCGGAAGGCGGCCGTCGGGTTCCTCGCCTGCG
TCGTGCTCTACCTCGCCTTCTCCTCCTACCTCCGTAGCCAGAGGGCTGCATATGTTCTGT
TACCAGCAGTTACTCACAGGGTATACCTGGACGTGGAAATTGATGGCCAAAATATAGGTA
GAATTGTCATCGGTCTTTATGGGGAAGTTGTGCCAAAAACAGTTGGTATTTTCACGCCCT
CTTTCTCTCTTCCTCCTAATGCTTTTATTTTCCTATTGAAGCGTATAACTCTATGGGGAT
AACGACCTAGTCAAACTGTCAAAGATTGCACGATTATCCTGTTGTGAAATTATATCT

Homology of Contig U35_43910 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None