barSeed - Barley Seed Development Database

Probe CUST_38380_PI390587928

Source Contig U35_17648

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38380_PI390587928	Hv_44K_v2	GCGCACAACATTTTTCGGTGCACAACATTTTTAAACTATAGATAAATTGCAAAATCGGCA	747	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.268	0.224	0.505	2.042	1.372	1.948
Raw	2.796	3.121	13.130	87.204	19.002	30.864

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC37155	568	3e-25	55 - 114	100	60 / 60	minus	ABC37155
Harvest35	U35_17648	861	3e-25	748 - 807	100	60 / 60	plus

Contig Sequence (861 bp)

>U35_17648 861 Hv_44K_v2
CACGCGTCCGCGGCAAGAGGCGCCGATCTGTTGTGTACGTGAACTTCGGGAGCGTGACCG
TGATGAGCAGCCACGACCTGGCGGAGTTCGCGTGGGGGCTGGCCAACAGCGGCCAGGAGT
TCCTCTGGATCGTCAGGCCGGACGTCGTGAAGAGCAGCGAGCTCGCCGGCGCCGCGCTGC
CCCCCGGGTTCCTGGAGGCGACCAGGGGCAGGGGGCTCGTGGCGAGCTGGTGCGACCAGG
AGGCGGTGCTGCGGCACGACGCCGTGTGCGTGTTCCTGACGCACAGCGGGTGGAACTCGA
CGGTGGAGGCCCTCTGCGGCGGCGTGCCGATGCTGTGCTGGCCCTTCTTCGCGGAGCAGC
AGACCAACTGCCGGTACAAGTGCGTCGAGTGGGGGGTGGCGATGGAGATCGGCGACGACG
TGCGGCGGGAGGCGGTCGAGGGGAGGATCAAGGAGGCGGTGGCCGGCGACAAGGGCAGGG
AGATGAGGGAGAGAGCGGACGAGTGGAGGGAGGCGGCTGTCCGCTCCACGGCGAGATCGT
TGACCAATCTTGATTCGCTCATCCATGGCGTGTTGCTATCTGGCAAGAATAGTTAGAGCA
TCTCCAACGGCCGAGCTTCCCGCCACATCCAAAAAATGTGTTTGCCGCGTACGCTTTGAC
TGATTTAACGCGGGGATAGGCGCTGACTTCAGTAGCCGCGCTAAAATGCAGTGCGCGCCG
CTCCAGCAGCGCGTAAAAATGCAGCGCGCGCACAACATTTTTCGGTGCACAACATTTTTA
AACTATAGATAAATTGCAAAATCGGCAAAATACTAAAAATAGATTGCATAAAATAAAAGA
CGATAAAAAAAAAAAAAAAAA

Homology of Contig U35_17648 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g36840.1	494	9e-98	protein\|cytokinin-O-glucosyltransferase 2, putative, expressed
Brachypodium v1_2	Bradi3g46870.1	312	7e-106
Arabidopsis v10	AT1G22360.1	481	8e-70	\| Symbols: AtUGT85A2, UGT85A2 \| UDP-glucosyl transferase 85A2 \| chr1:7895068-7897527 REVERSE LENGTH=481