barSeed - Barley Seed Development Database

Probe CUST_38378_PI390587928

Source Contig U35_17649

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38378_PI390587928	Hv_44K_v2	TGCAACACTCGGTAAAATACAAAACTCGGCAAATGCGTCATTTTCCGGTGTGATAAAAAA	1782	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39813.1	1037	2e-24	238 - 297	100	60 / 60	minus	ABC14081 ABC15712 ABC21253
JLOC1	JLOC1_25983.1	1066	8e-25	266 - 325	100	60 / 60	minus
Harvest35	U35_35838	526	3e-25	234 - 293	100	60 / 60	plus
Harvest35	U35_17649	1853	3e-25	1783 - 1842	100	60 / 60	plus

Contig Sequence (1853 bp)

>U35_17649 1853 Hv_44K_v2
GTGAGCACGCGTAGACGTCTACGCCTCCGCCCACGCCCGCCGTATTATATACCACCGCGT
CACGACCTCATGTGGCACAGCTCCACTGCACTGCCGGCCACGCGCGCAAGGTGGTGATGG
TGACCGAGAGAGCTACCGGGACCAACAAGGCGAAGCAGCTAGCTCCTAGCAAGGCCATGG
GCATGGGGTCGCTGCCGCCGGGCGAGAGGCCGCACGCCGTGATGATCCCCTACCCGGCGC
AGGGCCACATCACGCCCATGATGAAGCTGGCCAAGCTGCTGCACACCAGGGGCTTCCACG
TCACCTTCGTCAACAACGAGTTCAACCACCGCCGCCTGCTGCGCTCGCAGGGCGCGGACG
CGCTGCATGGCCTGCCCGCGTTCCGGTTCGCCGCCATCGCTGACGGCCTCCCGCCGTCCG
ACCGCGAGGCCACGCAGGACGTCCCCGCGCTGTGCTACTCTACCATGACCACCTGCCTCC
CCAGGTTCAAGGAGCTCGTCGCCAAGCTCAACGAGGAGGCCGAGGCCTCCGGTGGCGCCC
TGCCGCCGGTCACCTGCGTGGTGCCGACAGCACAATGACCTTCGCCCTCCGCGCCGCGCG
GGAGCTCGGTCTCCGATGCGCCACGCTCTGGACCGCCAGCGCCTGTGGTTTCATGGGCTA
CTACCACTTCAAGGATCTAGTCGACCGCGGGCTCTTCCCTCTCAAAGAAGAGGCTCAGTT
GAGCGATGGATACTTGGACACGACCATCGACTGGATACCGGCGGCGCCCAAGGACCTGCG
GCTGCGTGACCTCCCGAGCTTCCTTCGCACCACCGACCCCGATGACATCATGTTCAACTT
CTTCATCCACGAGACGGCCGGCATGTCACAGGCGTCGGGGGTGGTCATCAACACCTTCGA
CGAGCTGGACGCGCCACTGCTCGATGCCATGTCCAAGCTCCTACCGTCCATCTATACAGT
GGGGCCGCTCCATCTTACGGCTCGCAACAACGTGCCGGAGGATAGCCCCGTCGCCGGCAT
TGGGTCCAACCTGTGGAAGGAGCAGGACGCACCCCTCCGGTGGCTCGACGGCCGGCCGCC
GCGCTCCGTCGTGTACGTCAACTTCGGGAGCATCACGGTGATGTCGAACGAGCATATGCT
GGAATTCGCGTGGGGGCTGGCCAACACTGGCTACGCCTTCCTGTGGAACGTGCGGCCTGA
CCTCGTCAAGGGCAACGAGGCCACACTTCCCCCGGAGTTTTCCGCAGCGACGGAGGGGCG
GAGCATGCTGTCGACGTGGTGCCCGCAGGAGAAGGTGCTGGAGCACGAGGCCGTTGGGGC
GTTCCTGACGCACTCCGGGTGGAACTCAGCGTTGGAGAGCATCTGCGGCGGCGTGCCGAT
GGTGTGCTGGCCCTTCTTCGCGGAGCAGCAGACCAACTGCCGGTACAAGTGCACGGAATG
GGGCATCGGTATGGAGATTGGGGACGACGTGAGGAGGGCCGAGGTGGAGAACATGATACG
GGAGGCCATGGAGGGGGAGAAAGGACTAGAGATGCGGCGACGCGTGCTGGAGCTCCGCGC
GAATGCGGTGGCCTCCGCACGGCGTGGTGGAAGGTCCATGCGCAACGTTGATATGCTCAT
CCACGAGGTGCTGCTAGCTTGAATCAAGCTGGTAAATGCTTTGGATAATCTATTGCTTAC
AAAGATAGTTTTATTGTCACTACTGCAATTTCACTGTACGGAGTGCCCGGCTCTTTACCG
AGAGCCAAACCGCGGACACTCGGTAAATTTATATACGCAGAGTGCAACACTCGGTAAAAT
ACAAAACTCGGCAAATGCGTCATTTTCCGGTGTGATAAAAAAAAAAAAAAAAA

Homology of Contig U35_17649 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g31200.1	498	0.0	protein\|cytokinin-O-glucosyltransferase 2, putative, expressed
Brachypodium v1_2	Bradi5g06377.1	491	0.0
Arabidopsis v10	AT1G22360.1	481	2e-151	\| Symbols: AtUGT85A2, UGT85A2 \| UDP-glucosyl transferase 85A2 \| chr1:7895068-7897527 REVERSE LENGTH=481