barSeed - Barley Seed Development Database

Probe CUST_38373_PI390587928

Source Contig U35_43915

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38373_PI390587928	Hv_44K_v2	GAGTGGAGTATTGGGATTTGGCCGACATGAAAAGATACCAATTTGTTTTTGCATTAAAAA	12	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.036	6.245	1.393	0.699	0.456	0.426
Raw	78.530	157.229	30.037	24.706	3.802	4.089

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC41202	513	3e-25	13 - 72	100	60 / 60	minus	ABC41202
Harvest35	U35_43915	513	3e-25	13 - 72	100	60 / 60	minus

Contig Sequence (513 bp)

>U35_43915 513 Hv_44K_v2
TTTTTTTTTTTTTTTTTAATGCAAAAACAAATTGGTATCTTTTCATGTCGGCCAAATCCC
AATACTCCACTCCATACATTGATACATACTTGCATGCATATTACACTCACGGACACACGC
CCAACTATTACAGTCTATCTAGTCACAAACAGCTGAACTTTAGATAATACTACTACTACT
TTTCAAAAATTGAACATAAATACTACATTAATTCATGCAGATATTTTTGAAACAAATCAA
GCAAATATATGCAAACACATAACTCACGGAAGATTACCAAATTACAAGCAGCTTGTTCTG
GTACATGCTTGATGAATTGGCGTGCTCGATCGATCTAGAGACACTTTCCTCCGTAGCCCG
CACTCGTGAACAATGCCTGCTTGATCTCGTCGGTGCTTGTCACTCGGCTCCTCCCTTCCT
CTTGTGAGCAGGATGCCTGCATGGCAAAGTCCCCGAAGCAGCTGATGACGCACTGCTCAA
TCTCCAACCCCAGCACGTCCAGCGCGCTCACTG

Homology of Contig U35_43915 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None