barSeed - Barley Seed Development Database

Probe CUST_38371_PI390587928

Source Contig U35_43916

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38371_PI390587928	Hv_44K_v2	CCCGGAAACATGATTCATTCAGAGAAAATGAACATATTTTTTCAGTGCATGCTCGAAAAA	12	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.418	3.147	1.088	1.013	0.633	0.564
Raw	58.587	57.540	16.827	26.201	2.696	3.380

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC41203	554	3e-25	13 - 72	100	60 / 60	minus	ABC41203
Harvest35	U35_43916	554	3e-25	13 - 72	100	60 / 60	minus

Contig Sequence (554 bp)

>U35_43916 554 Hv_44K_v2
TTTTTTTTTTTTTTTTTCGAGCATGCACTGAAAAAATATGTTCATTTTCTCTGAATGAAT
CATGTTTCCGGGAGAGATTTACAGTAATTTGAATGCTATTGTTCGTAGTATGATTTATAG
CAATGGCTTGTCGATCGATCAGTTCGTGTTGAACGCCGAGCACACGTCCCTGATCTCCCC
GGCGTCGCCGGTGATGGCGCCGATGGTGCCCATCTTGATCATGGCGCCGACGAAATCCTG
CGCGAAGCTGGCGGACGCCGCGCCGAGGTAGGCGCCGACGAGCGCGCCGGTGGCGTTGTT
GGCCTCAAGCGCCGCGTCGGAGGCGATGGCGACAAGGCCTGAGCGGATGTTGCGGAGGAT
GGAGTCNTCAAATCTGCCCTGGCTGCCGCGGTCCAGTGGCACGCGCGTGTTGAAGTCGCC
GGGCGCGCACCGGGCCTTGAGCTCCGACAGGAACGCCGCCGGGATCGACGGGTCCGACCC
CGTGCGGCCGCCCGGCAGCGGAAAGCTGTANAGCCGATCCTTGACGAAGAAGCACGCCGT
CGTGCCGATCGTGT

Homology of Contig U35_43916 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g08920.1	328	7e-68	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi4g40680.1	313	3e-63
Arabidopsis v10	None