- Probe CUST_38369_PI390587928
- Source Contig U35_29624
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_38369_PI390587928 | Hv_44K_v2 | CTGGGTTGGGTTATGGGACCTATTCAATTGTTCTCATGCTTTTTGAATGGCGCGACATTG | 70 | GeneList: darkgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.836 | 1.830 | 2.701 | 1.717 | 0.838 | 0.647 |
| Raw | 7.590 | 28.923 | 35.773 | 35.629 | 4.525 | 3.423 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK374273 | 2670 | 2e-24 | 1579 - 1638 | 100 | 60 / 60 | plus | ABC15036 |
| MLOC | MLOC_17583.4 | 804 | 2e-24 | 271 - 330 | 100 | 60 / 60 | plus | ABC15036 |
| MLOC | MLOC_17583.3 | 1382 | 2e-24 | 894 - 953 | 100 | 60 / 60 | plus | ABC15036 |
| MLOC | MLOC_17583.1 | 1505 | 2e-24 | 963 - 1022 | 100 | 60 / 60 | plus | ABC15036 |
| MLOC | MLOC_17583.2 | 1478 | 2e-24 | 931 - 990 | 100 | 60 / 60 | plus | ABC15036 |
| JLOC1 | JLOC1_12138.2 | 1589 | 8e-25 | 956 - 1015 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_12138.1 | 1495 | 8e-25 | 944 - 1003 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC28993 | 610 | 3e-25 | 71 - 130 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_29624 | 610 | 3e-25 | 71 - 130 | 100 | 60 / 60 | plus |
Contig Sequence (610 bp)
>U35_29624 610 Hv_44K_v2 CAGATGTGGAGCTGATACCTGGGCAAATTTGGATGTTCGCTCAAAGGACATAGGCTGCTT GCCTACAAATCTGGGTTGGGTTATGGGACCTATTCAATTGTTCTCATGCTTTTTGAATGG CGCGACATTGGCTTTATATCATGGTTCTCCACTTGGACGTGGTTTCTGCAAATTTGTCCA GGATGCCCATGTGAGTGCATTAGGATCTGTGCCTAGCTTGGTGAAGTCATGGAAGGCTGG GAATCACACTAAAGGGCTAGACTGGACCAAAATCAGGGTACTATCTACGACAGGGGAGGC TTCTGATATTGATGATAATCTGTGGCTATCTTCGCGTACCTGTTACAAGCCCATTGTTGA GTGCTGTGGTGGTACAGAGCTGGCATCCTCATTCATTCAAGGGAGTCTCCTGCAGCCCCA AGTTTTTGGAGCTTTCAGTGGTGCATCAATGTCCACAGGGTTTGTCATACTCGATGAACA GGGAAATCCATATCCAGATGATCTACCTTGTTCTGGAGAAGTGGGTCTCTTCCCTTTATA TTTTGGTGCCACCGATCGGCTTCTGAATGCTGACCATGATAAGGTTTACTTCGATGGAAT GCCCATTTAC
Homology of Contig U35_29624 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g59080.1 | 731 | 3e-122 | protein|AMP-binding enzyme, putative, expressed |
| Brachypodium v1_2 | Bradi1g04830.1 | 731 | 2e-130 | |
| Arabidopsis v10 | AT1G55320.1 | 727 | 2e-95 | | Symbols: AAE18 | acyl-activating enzyme 18 | chr1:20633371-20636659 FORWARD LENGTH=727 |