- Probe CUST_38368_PI390587928
- Source Contig U35_43918
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_38368_PI390587928 | Hv_44K_v2 | TACACCGTCAAGTGTATGTACTAGGTAGATTTTCACCATTATGCAGACAAATTTGAAACT | 0 | GeneList: darkturquoise MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.579 | 0.997 | 0.939 | 1.727 | 0.911 | 0.972 |
Raw | 40.569 | 118.935 | 91.873 | 248.933 | 51.981 | 57.771 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_74329.1 | 1122 | 7e-23 | 86 - 142 | 100 | 57 / 57 | minus | ABC41206 |
JLOC1 | JLOC1_49530.1 | 1130 | 4e-23 | 982 - 1038 | 100 | 57 / 57 | plus | |
Harvest21 | ABC41206 | 521 | 3e-25 | 1 - 60 | 100 | 60 / 60 | minus | ABC41206 |
Harvest35 | U35_43918 | 521 | 3e-25 | 1 - 60 | 100 | 60 / 60 | minus |
Contig Sequence (521 bp)
>U35_43918 521 Hv_44K_v2 AGTTTCAAATTTGTCTGCATAATGGTGAAAATCTACCTAGTACATACACTTGACGGTGTA TATTTCATATGTTCAGTCAGAATCATACAATGTCCTGTACTGGATAATTCAGCAAGATAT GACCGAATTGGGCTAAGCTGATGAGCCCCAGGCTGCTGCCGCCTCGGCTTGGAGCGCCTC CTGGAGCTCCTGGGCTACAGCGACCAGGAAACGGTCACCACCATGGCCTGCGAGCAGCGA GACCGACACCGGAACGCCGTGGCGGGTGCCCAGCGGGATGCTCACCTGGCAGAACCCCGA CAGGCCGGCAATGGATAGCAGGGAGAAGGCCCTCGCCCGGAAGTCCTCCAGCAACGCCGC GTCCATGCGTAGCTTCGGTGGCGCGCCGGGGACCGTAGGGATTGCCAGGATTCCGTCGTC CTTGAGGAGAGCGGCTAGGGCAGACTTGAATTCGGTCCTGACGGCATGAAGATCATCCAT GGCGGATCTATCCTCCGATGCGATGGCCTTCTGCACTCGCT
Homology of Contig U35_43918 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |