barSeed - Barley Seed Development Database

Probe CUST_38364_PI390587928

Source Contig U35_29629

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38364_PI390587928	Hv_44K_v2	TGCTATCGCGGTTCAATAACTCGCTCTGGATGCAGGAAGGCGACGGCCATGAACAACAGG	125	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76805.1	2193	2e-24	298 - 357	100	60 / 60	plus	ABC21686
Harvest21	ABC29003	334	3e-25	126 - 185	100	60 / 60	plus
Harvest35	U35_29629	334	3e-25	126 - 185	100	60 / 60	plus

Contig Sequence (334 bp)

>U35_29629 334 Hv_44K_v2
GGGCTCTCATCTGCTCTCCTCTGTCCTTCTGCTCTGCCATCTCTGCGATTTTGCCGCATG
CCAGCTCCTCTTCCGGTCATAACCGCACCAAACACTCTCACACCGCGCCGCCATTTCCGC
GACCATGCTATCGCGGTTCAATAACTCGCTCTGGATGCAGGAAGGCGACGGCCATGAACA
ACAGGGCCTCGGCCACGAGCAGCCGGCGGCGATGGGGATGATGCCGATGATGGGGCAAGA
GGCTGGGAACCACCACGACCCGCACCTCCTGTCTATGCCCACGGGGGGAGGCGGCGGGTT
CCGCGCCCCGTCGATGCTTGACGAGGACTGGTAC

Homology of Contig U35_29629 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None