barSeed - Barley Seed Development Database

Probe CUST_38360_PI390587928

Source Contig U35_17651

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38360_PI390587928	Hv_44K_v2	GGCGGGTCTTGAATACAAGATTCCTCCAAAGAGACTAGAATTGTCAATTCTTCATCAAAA	1403	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364612	2675	2e-24	2523 - 2582	100	60 / 60	plus	ABC07881
MLOC	MLOC_61111.1	2543	2e-24	357 - 416	100	60 / 60	minus	ABC07881
JLOC1	JLOC1_39912.1	2392	8e-25	206 - 265	100	60 / 60	minus
Harvest21	ABC07881	1572	3e-25	1404 - 1463	100	60 / 60	plus	ABC07881
Harvest35	U35_17651	1571	3e-25	1404 - 1463	100	60 / 60	plus

Contig Sequence (1571 bp)

>U35_17651 1571 Hv_44K_v2
GCCCCAGCGGCGACAACTGTGAGTTCTCCCATGGCGTGTTTGAGAGCTGGCTGCACCCGA
CACAGTACCGCACCAGGCTCTGCAAGGAGGGAGCTGCTTGCGCCCGCCGCATCTGCTTCT
TCGCGCATGATGAAGATGAGCTCCGCCATGTACCCCACAACAGTGGGGCTGGTCTGCTAT
CACCCCGTGCAACTTCATCAATCGACATGACTGCCGCTGCTGCACTTGGGCTTCTCCCTG
GATCTCCTAGGCACTTTGCGCCGCCTCCTGGGTCACCATCTGCCATGAACAACGGCGGAG
CTGCTTCTGCGCATTGGCTTCAAGGTAGCAGGCTGCGTTCTTCTTTCAACGCAAGAGATG
CGACAGTTGAAGACCTTGGCTTGCTCCTCGACTGGGAATCACAGTACCTTGGGGCACTCT
GCCTCCCACCCAGCAGCCGTCCCCAGCCCCGTCTTTCCACTGGCCTTAGCATCAGGCCTA
CAGCAATTGTCCCCACCAGTCTTGAAGATATGTATGCTTCAGAGATGGGAATGTCACCGA
GGTTCACCAATGATCAAGGTCACTCAGCCTACTCACCAGCCCACAAATCAGCCATCCTTA
ACAAGCTTCATCAGCAGAAGGGTCTCCTCTCACCTGTCAACACCAACAGAATGTACTCAC
CAAGGGCTCTTGATCCGGCAGCGCTCGTCCAGTCTCCAATTGGTGGCATGTCTCCTCGAT
CCCCTCGGCTCATGGAGCCAACATCGCCCATAAATGCCCGTTTTGGAGCCGCTGTCACGC
AGCGTGAGATGTATGAGCAGTTCTCTAACCTGAACAAGCACCAGCTGCCATCGGTGGGTT
CGCCGCGGAATTCCAATGCTGCTTCATGGGGCAATGCGGGTTCCCCAATGGGTAAGGTTG
ACTGGGGTGTTGATGGTGAGGAGCTGGATCGATTGAGATGCCCTGACCAACCAGGGTTTG
CAGAGAAGGAGCCGGATGCACCATGGGGGCGGTCGCCGAATAGCAACAGGGGCGAAATGC
AGCTTGGCATATCGGGAGGCATGGCTTCTGGATCGGCAAACAGGCCTGACTGGAACAACC
AGGCTGATATATTGGATCAGATGGCCATTGGTGCTTGGCTGGAGCAGCTGCAGACGGATC
AGAAGTGACTGAAGGAGGCCACAGTTGATGAAACCATCATTTTGCAAGGTGGTTATTTAC
CAAAGAATAGTTGCTGGTCCTAGTAAATAATAATTATTCATTTTTATTCTTGAATTTTTG
GTGGCAAAGTCAGAGATGGTGGTGTTGAAACAAACAAAGCATCCCGTCACAGACAGATTT
GTAGCTGAAAGCAGTTGAGGATATTCAGTAAACAGCCTCTTTACTTCATCAGTGTCCTAA
CTAGTATTCTTTTGGTTAGTTCAGGCGGGTCTTGAATACAAGATTCCTCCAAAGAGACTA
GAATTGTCAATTCTTCATCAAAATGAATGATTTTATGATAACAAAAAAAAAAACTTCTGT
TTTCGCTCGTGTTATTAATTGACATTTTTTCATACAAAAATGGAATGGTTTGTATGGTAA
CAAAAAAAAAA

Homology of Contig U35_17651 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g38090.1	658	0.0	protein\|zinc finger family protein, putative, expressed
Brachypodium v1_2	Bradi1g24270.1	662	0.0
Arabidopsis v10	AT2G41900.1	716	4e-61	CCCH-type zinc finger protein with ARM repeat domain \| chr2:17491352-17493502 FORWARD LENGTH=716