barSeed - Barley Seed Development Database

Probe CUST_38359_PI390587928

Source Contig U35_17652

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38359_PI390587928	Hv_44K_v2	CTCTTACTAGTTGGACTGGAGGCCTAATAGACTATTTCTGATGGGGAGATGTATGATTTC	1489	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.322	1.929	1.101	0.815	0.381	0.460
Raw	1085.701	1381.001	711.177	840.079	135.284	176.479

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62784.1	1662	7e-23	1461 - 1520	98	59 / 60	plus	ABC10627
JLOC1	JLOC1_41108.1	1748	4e-23	1570 - 1629	98	59 / 60	plus
Harvest21	ABC10627	1508	3e-25	1446 - 1505	100	60 / 60	plus	ABC10627
Harvest35	U35_17652	1552	3e-25	1490 - 1549	100	60 / 60	plus

Contig Sequence (1552 bp)

>U35_17652 1552 Hv_44K_v2
TCGAGCACTGTTGGCCTAACAAGAGCGCAGCCGAAAAATGTTCGCCCTCCGCAAAACCCT
GCTCCACGGCCGCCTCCCCGCGCCGCCGGCCACCGCCGCCTCCAGGATCTCCTCATTCCT
CCGCTCCCTCTGCACATCTCCGGGGGGCGAGGGGGGCGGGGACGAATGGGGCTCCTCCTG
GTCCACCGGCATCACCAAGGACCACTTCGACGGGTCCGCCTCCGCCGTCGGCCGCCCCTC
CCCGTCCGCCCCCGTCTCCAAGGAGCTGGCGGCCGTACGCGCCATGGACGAGGAGGAAGA
GATCCTGCGCTCCGTGGATCGCGACAACAAGGAAGGGAAGGAGTTCGTGGACTCGTGGGA
CAAGCGGTTTCAGGAGACGTGCGAGCTGCTGAAGCAGGTGCGGGAGCCCGGATCCCGGGG
CTCCTACCTCAAGGACTCGGAGAAGCAGGAGATGTACCGGCTGCACAAGGAGGACCCCGC
CACGTACACCGTGGAGCGGCTCGCCAAGGACTTCCGCGTCATGCGGCAGCGCGTGCACGC
CATCCTCTGGCTCAAGGAGATGGAGGAGGAGGAGGAGAGGAAGCAGGGCAAGCCGCTCGA
CGACTCCGTCGAGATCCTGCTAGATAGCTGCCCAGAGTTTTTCAATTCCCATGACAGGGA
GTTTCATGTGGCATCTCTTCCATATAAACCTGACTTCAAAGTTATGCCTGAGGGCTGGGA
TGGTACAACAAGAGATCCTGATGAGGTCCTGTATGAGATTTCGATGAAGGAAGACCAGAT
GTTATATGAGGAATTTGTTCAACGCTTGGAGTTCAACAAGAAAAAGGTGGCAGGGGAGGT
GAAGTGCCACAAGTACAGCAGACGACGACCAGACGATGGATGGGCCTACATGGTTGAGAA
GCTCGGACCACAGGGAAGGCGTGGTTCAGGAGGGGGCTGGAAGTTCATCAGTTTGCCCGA
TGGATCAAGCCGCCCACTGAACGACACGGAGAAGATGTATGTGAAGAGGGAGACTCCCAA
ACGGCGGAGGAGGATCATTGCTCCTTACAAGTAATAGGAAGGCCCCTTCGCTCGTTATAA
TGCACGTTCTATGAACGAATGGTCTATTGTCGTTCTCCAGGGAAGCAGAAGCGTGAGAGG
TTGTAACCACAGGCATCGGTCGTGTTTTGTTGCAGCGCCAGCAGAATTCATCTTGTTTTG
TTGCAGCGCCACCAGAATTCATCTTGTTTTGTTGCAGCGGAGGTGGCTTAATGTATTCTT
GGCATTTGTAACAAGTTCCATTCCCCACTTCAGGCTGATGAATAATATGTCTTTGAACCG
TTGGCGTCTCAAAAAAAAAAAAACAGTGTCCACAGCATTTCTGGGCAGGTCACTCGGTAG
GCATTACCAGGCAAACACACTTTTTGTAGTTAACATTTCATATTATCTCCTTTAGTTCTT
TTTTTTTTTGCTTGCAACGAGTACTAGTACTACCAGGGCATAAAATTTCCTCTTACTAGT
TGGACTGGAGGCCTAATAGACTATTTCTGATGGGGAGATGTATGATTTCCTT

Homology of Contig U35_17652 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g58750.1	346	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi2g52580.1	360	0.0
Arabidopsis v10	AT5G62270.2	420	1e-119	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: mucin-related (TAIR:AT2G02880.1). \| chr5:25012227-25014486 FORWARD LENGTH=420