barSeed - Barley Seed Development Database

Probe CUST_38355_PI390587928

Source Contig U35_17655

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38355_PI390587928	Hv_44K_v2	GGAAATACACACATGTTGTAGCTCTGAATTGCAATTTTGAGGTGTTCATGTTCGAAAAAA	1696	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64084.2	1848	9e-22	1656 - 1710	100	55 / 55	plus	ABC08611
JLOC1	JLOC1_42034.1	1853	5e-22	1656 - 1710	100	55 / 55	plus
Harvest21	ABC08611	1787	2e-22	1697 - 1751	100	55 / 55	plus	ABC08611
Harvest35	U35_17655	1767	3e-25	1697 - 1756	100	60 / 60	plus

Contig Sequence (1767 bp)

>U35_17655 1767 Hv_44K_v2
AAACCCCAGCCCCGTGTTCCCCGTCTCTCCTCGCAGAACTTCCTCGCCGCCGCCGCCGCC
GCCGCCGACGCCGCCGACGCCGACCTTTGCCGAGGATGGCGGCGAAGCAGCCGTTGGCGG
ACGTGGAGGACGGGCTCCTCGCCCACCTCAACGCGAACGCCGAGATCCCCGACTCCCGCT
CCTTCGCCTCCTCCCTCGGCGTCCCGCACAAGGACGTCGAGGACGTCATCAAGAGGCTCT
CCGCCTTCCGCATCGTTGAGAGTGCGGACATCACCAAGGAGACGTGGATGCTCACCGATG
AGGCCAAGGGGTATGCCGCGAGGGGCTCCCCCGAGGTGCAGCTCGTCGCGGCCATCCCGC
CCGAGGGTGCCTCCAAGGGCGTGCTCAGGGAGACATTGGGGGACGTGTTCGATATTGGAA
TGAAGGCTGCAGCCAAGAACAAGTGGATTGGATTTGAGAAGGGAAACAAAGACCTCGTAC
TGAGAAAGGTTGAGGATACCAAGGATGAGTTGCAAGAGCAGCTTAAAAGACTGGAGAATG
GGGAGGTTATTGCTGATGAAGTAATAAATGATTTGAAGAGAAGAAAGCTTGTAACAAAAG
AAAAATCTATTTGGTATTCACTGAAGAAGGGACCTGAATTTGTTGTAAAGAGAAAAACAT
TGGCTACTGATGTGACACGAGAACATCTCAAGAGTGGCGACTGGAAGGACCTGGAATTTA
AAGATTATAACTATGGAGCTCAAGGACAACCTATTGCGATAGGATATAGTCAACCGTTGT
TAGAGGTCCGTGAGGCAATCCAGAACATTTTTCTCGAGATGGGGTTCACTGAGATGCCAA
CGAACATGTTTGTAGAGAGCAGCTTCTGGAATTTCGATGCACTGTTCCAGCCGCAACAGC
ATCCTGCTCGTGATTCGCATGATACCTTTTTTCTCAAAGCCCCTGCTACAACAACACAAT
TACCCGTTGACTATCTTGAGAAAGTAAAGCAAGTACATCAGTCTGGTGGTTATGGCTCCA
AAGGATATGGTTACGACTGGAAGCGAGATGAATCAGAGAAAAACCTGCTTCGTACTCACA
CAACTGCAGTTTCAGCAAGGATGCTATATAAGCTAGCACAGGAGAAACCTTTTGCTCCTA
AGAGATACTATTCTATTGATCGTGTTTTCCGGAATGAAGCTGTGGATCGAACTCATCTTG
CAGAATTCCACCAGATAGAAGGTCTTATTTGTGATTATGGTTTGACGCTTGGTGATCTGA
TAGGTGTATTGGAGGATTTCTTCTCCAGACTAGGCATGTCAAAGCTGCGTTTCAAACCTG
CCTACAACCCGTACACTGAACCAAGCATGGAAATTTTCAGCTACCACGATGGTCTGAAGA
AATGGGTGGAAATAGGCAACTCAGGCATGTTCAGGCCTGAAATGTTACTTCCCATGGGAC
TGCCAGAGGGTGTTAATGTTATCGCATGGGGTCTTTCACTTGAAAGGCCAACAATGATTA
TGTATGAGATTGACAACATACGGGATCTCTTTGGGCCAAAGGTCGACTTCAATGTGATCA
AGAACAGTCCGATCTGCCGCTTGGGGCTGAAGCGAGCTTGATACAACTTCATCTGGATGC
CTGGATGCGAATGATGTTTCTTTGTGGTTCTACAACCTTTGAAAACCAGTACTTGTGCAT
TTAACGGAGGGAGTGCGGAAATACACACATGTTGTAGCTCTGAATTGCAATTTTGAGGTG
TTCATGTTCGAAAAAAAAAAAAAAAAA

Homology of Contig U35_17655 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os10g26130.1	494	protein\|phenylalanyl-tRNA synthetase, putative, expressed
Brachypodium v1_2	Bradi3g58130.1	499
Arabidopsis v10	AT4G39280.1	485	phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative \| chr4:18281641-18284831 REVERSE LENGTH=485