barSeed - Barley Seed Development Database

Probe CUST_38353_PI390587928

Source Contig U35_17656

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38353_PI390587928	Hv_44K_v2	ATGTATCATTGCACGTTGCCTTGCTCACTTGAGCTCAATAACACATTGGGGTTATGCTGT	1866	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.382	1.363	1.182	0.864	0.322	0.380
Raw	9977.260	15396.850	11748.830	13604.680	1762.247	2275.750

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_18078.3	1811	8e-25	1639 - 1698	100	60 / 60	plus
JLOC1	JLOC1_18078.2	1628	8e-25	1456 - 1515	100	60 / 60	plus
JLOC1	JLOC1_18078.1	1636	8e-25	1464 - 1523	100	60 / 60	plus
Harvest21	ABC09065	1934	3e-25	1864 - 1923	100	60 / 60	plus	ABC09065
Harvest35	U35_17656	1946	3e-25	1867 - 1926	100	60 / 60	plus

Contig Sequence (1946 bp)

>U35_17656 1946 Hv_44K_v2
GCCGGCGCCTCCGTCTTCCCCCGAAATCGCCGCCACCTTCCGGCGCGACCCCCGCGGGCT
CTCCTCGCTCCACTCCGCGTCGCCGCTTCGTCTTCCCGTCCCCGCACGCTCCTCGGCCGG
CGGCAGCGGCGGCGATGAGGATCGACGAGGTACAGTCGACGTCGAAGAAGCAGCGCATCG
CCACCCACACCCACATCAAGGGCCTCGGCCTCGACGTACGCCAATGGGACGGCGATAGGG
ATGTCGGCGGGATTCGTGGGGCAGGCGGAGGCCAGAGAGGCGTCTGGGCTGGTGGTCGAC
ATGATCCGCCAGAAGAAAATGGCTGGACGCGCGCTGCTCCTCGCCGGCCCACCTGCCACC
GGCAAGACCGCGCTCGCTCTCGGCATCTCCCAGGAGCTGGGCAGCAAGGTCCCTTTCTGT
CCTATGGTAGGATCAGAAGTGTACTCTTCAGAGGTCAAGAAAACTGAGGTCCTGATGGAA
AATTTTCGTAGAGCTATAGGCTTACGTATAAAGGAAAACAAAGAAGTCTATGAAGGAGAG
GTTACAGAGCTTTCCCCAGAAGAATCTGAGAGTTCAACCGGTGGATATGGGAAAAGCATT
AGCCATGTAGTAATTGGCCTGAAGACTGTAAAAGGGACTAAGCAACTAAAGTTAGATCCT
ACAATTTATGATGCTTTAATCAAGGAAAAGGTGGCAGTCGGTGATGTTATATACATCGAA
GCTAACAGCGGCGCAGTGAAAAGAGTTGGCAGATGTGATGCTTTTGCTACAGAATACGAT
CTTGAAGCAGAGGAGTATGTTCCAATTCCCAAAGGGGAAGTCCACAAGAAAAAAGAAATA
GTGCAGGACGTTACACTGCATGACCTTGACGCTGCAAATGCCCAGCCACAAGGAGGCCAA
GATATTTTGTCCCTTATGGGCCAGATGATGAAACCACGGAAGACTGAAATCACTGAGAAG
CTGCGCCAAGAGATCAATAAGGTGGTTAACAGATATATCGACGAAGGTATTGCAGAGCTT
GTACCTGGTGTGCTGTTCATTGATGAGGTTCACATGTTGGACATTGAGTGCTTCTCTTAT
CTTAATCGTGCTCTCGAGAGCTCATTATCGCCAATTGTAATACTCGCTACGAACAGAGGA
ATATGTACTGTAAGGGGAACTGACATGACAAGTCCCCATGGTATCCCAGTCGATCTCCTA
GATAGGCTGGTTATCGTACGGACACAGATATATGGCCCTATCGAGATGATCCAGATATTA
GCTATTAGAGCACAAGTGGAGGAGATTGAAATTGATGAAGACAGTCTTGCATTTCTAGGA
GAGGTTGGGCAGCAGACATCTTTGAGACATGCTATTCAGTTGCTGTCACCTGCCAGCGTA
GTTGCCAAGGCTAATGGGAGAGAGAAGATCTGCAAGGCTGATCTCGAAGATGTTCGTGGT
CTGTATTTGGATGCAAAGACCTCTGCTAATTTGCTTCATCACCAGCAAGGAAAATACATC
ACCTAGATTACCCTTGCACAAGAATTTTCAGCTGTCGGCTCAGGTGACTGAACTCGGTAA
GCAGGTGCAGACTTCAAGAGCACAATTGGGGGCATTGTTTTCGTAGCAGGTGCACTCTGG
ACTGGACTTCCATTGGTTCCAGAGGACAATTTGATTCTGGTCTATGGCTTCTGTTTGCCG
ATTAGATTTAGATTATGTGTAGGGATTATCGTGCATCTTCGTTGCCATTGCTAATTAATG
GTTAGATCTCGTTTTCCCTCTTCGACTACCAGTCAGCCTTGGATGTATCAGGTCGTGATT
CTATTATGGTAGAACTGGAATTTCTTGGATTATGTCTTGTGTTAAGACCGACTCAACCTG
TCGAGCATGTATCATTGCACGTTGCCTTGCTCACTTGAGCTCAATAACACATTGGGGTTA
TGCTGTAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_17656 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g08170.1	456	protein\|ruvB-like, putative, expressed
Brachypodium v1_2	Bradi2g54390.1	456
Arabidopsis v10	AT5G22330.1	458	\| Symbols: ATTIP49A, RIN1 \| P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr5:7391026-7394071 REVERSE LENGTH=458