- Probe CUST_38352_PI390587928
- Source Contig U35_17657
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_38352_PI390587928 | Hv_44K_v2 | GAGCTGGGCAGCAAGGTCCCTTTCTGTCCTATGGTAGGATCAGAAGTGTACTCTTCAGAG | 406 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.713 | 1.369 | 1.163 | 0.716 | 0.446 | 0.407 |
| Raw | 2325.267 | 2633.377 | 2141.477 | 1959.359 | 451.459 | 458.123 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_50128.1 | 196 | 2e-24 | 88 - 147 | 100 | 60 / 60 | minus | ABC09065 |
| Harvest21 | ABC09066 | 602 | 3e-25 | 400 - 459 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC09065 | 1934 | 3e-25 | 391 - 450 | 100 | 60 / 60 | plus | ABC09065 |
| Harvest35 | U35_35303 | 828 | 3e-25 | 642 - 701 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_17657 | 466 | 3e-25 | 407 - 466 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_17656 | 1946 | 3e-25 | 394 - 453 | 100 | 60 / 60 | plus |
Contig Sequence (466 bp)
>U35_17657 466 Hv_44K_v2 GTCTCTCTCCCCTGTCTGCCGGCGCCTCCGTCTTCCCCCGAAATCGCCGCCACCTTCCGG CGCGACCCCCGCGGGCTCTCCTCGCTCCACTCCGCGTCGCCGCTTCGTCTTCCCGTCCCC GCACGCTCCTCGGCCGGCGGCAGCGCCGGCGATGAGGATCGACGAGGTACAGTCGACGTC GAAGAAGCAGCGCATCGCCACCCACACCCACATCAAGGGCCTCGGCCTCGACGCCAATGG GACGGCGATAGGGATGTCGGCGGGATTCGTGGGGCAGGCGGAGGCCAGAGAGGCGTCTGG GCTGGTGGTCGACATGATCCGCCAGAAGAAAATGGCTGGACGCGCGCTGCTCCTCGCCGG CCCACCTGCCACCGGCAAGACCGCGCTCGCTCTCGGCATCTCCCAGGAGCTGGGCAGCAA GGTCCCTTTCTGTCCTATGGTAGGATCAGAAGTGTACTCTTCAGAG
Homology of Contig U35_17657 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi2g54390.1 | 456 | 9e-52 | |
| Arabidopsis v10 | None |