barSeed - Barley Seed Development Database

Probe CUST_38350_PI390587928

Source Contig U35_17659

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38350_PI390587928	Hv_44K_v2	CCCAAAGTATATATATATGTCAAGGGGAGGAATCCATCAATGTTTGAAAGCACCAAAAAA	1568	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358422	2842	7e-23	1607 - 1663	100	57 / 57	plus	ABC07332 ABC10044
MLOC	MLOC_73988.1	1724	7e-23	2 - 58	100	57 / 57	minus	ABC07332
JLOC1	JLOC1_49288.1	1824	4e-23	1674 - 1730	100	57 / 57	plus
Harvest21	ABC07332	1639	3e-25	1569 - 1628	100	60 / 60	plus	ABC07332
Harvest35	U35_17659	1639	3e-25	1569 - 1628	100	60 / 60	plus

Contig Sequence (1639 bp)

>U35_17659 1639 Hv_44K_v2
GAGAAAGGGTAACGGAGCAGGCCGGACCGGAGCAGCGGAAGCCTCAAGCCACCACCACCA
TCCTCCGATTCAGATCTCCCCTCCCATTCCACCGACCGGACCCCTCTCCGTCTCCATTTC
TCCACACCAAACGCCTCTCCGACCTCGGTGACGACCTCCTCGTCGTACAGGGGGCCATCA
GCGGCGGCGGCGGAGGCCAATGGAGGCCATCCGGAAGCAGGCATCCAAGCTCCGAGAGCA
GGTCGCCCGGCAGCAGCAGGCCGTGCTGAAGCAGTTCGGGGGCGGGTACGCGGACAGCGT
GTTCGCGGACGAGGGCGAGGCGCAGCAGCACTCGAAGCTCGAGAAGCTCTACATCTCCAC
GCGCGCCGCCAAGCACTTCCAAAGGGATATAGTTCGTGGGGTCGAGGGCTACATCGTCAC
AGGCTCGAAGCAAGTCGAATTAGGCAATAAGTTATGTGAAGATGGCAAGAAGTATGGTGT
TGAGAATACCTGTACCAGTGGGAGTACACTCTCGAGGGCGGCGTTGAGTTTCGCGAAGGC
ACGATCGTTGATGGAGAAGGAGCGGGGAAACCTGCTGAAAGCGTTTGGCACCCAGGTTGC
AGAGCCACTGAGGGCTATGGTGATGGGAGCTCCTTTGGAAGATGCTCGTCACCTTGCCCA
AAGATATGACAGAATGCGTCAAGAAGCTGAAGCACAGGCTATTGAAGTTTCAAAGCGCCA
GATGAAATTAAGAGAGACATCTGGAAATGGTGATATGATTTCAAGGTTAGAGGCTGCTGA
GTCGAAGCTGCAAGAGTTAAAATCAAATATGGGGACTCTAGGCAAAGAAGCTGTTGCAGC
AATGACTGCTGTTGAAGCCCAACAACAAAGGCTGACATTACAACGACTTATCGCGATGGT
TGAATCTGAGAGAAGTTACCACCAAAGGGTCCTACAGATTCTAGATCAACTTGAAAGAGA
GATGGTAGCTGAGCGCCAAAGAATTGAAGGAGCACCTCCTCCAGTCATTGAGAACTCTAT
GCCACCGCCACCTTCATATGAAGAAGTTAACGGTATATTCATGAGGACTCCAACAGTTGC
CGAATTGGTGGAGACAGTGGAGCACTTCCTGGCTGAGGCGATCCAGTCATACCGAGCTGA
GACTGAAACTGAGCTCAACCTGGCAACCGGTGACTACATAGTGGTCCGGAAGGTGTCAAA
CAATGGATGGGCTGAAGGTGAGTGCAGGGGGAAAGCTGGTTGGTTCCCTTCCGAGTTCAT
CGAAAAGCGGGACCGTGTACTGGCGAGCAAAGTCGCCCAGGTCTTCTAGAAGTTCATTGA
GCCATACATGTCCTTGGCGTTGTACAATGTGCATTATAATGTTCTTTCGCCTCCAAAGAC
GTTGATCAGTGAAGAGCTCGTGGAAATTCCTTTTGTTCTATATATGTTCTTTTTGTCAAG
AAGACATGTGCCTGATGGATGGCTTGTTGGTGCCTCATGGCTAGCCGTGTGCACTGTTGT
TATCTGCATCCTCCCCCCAAATATGACACTGACTTGACCATTTTTTCCAGAATTCTTTTT
TGCGGGAACCCAAAGTATATATATATGTCAAGGGGAGGAATCCATCAATGTTTGAAAGCA
CCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17659 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g36870.1	371	0.0	protein\|src homology-3 domain protein 3, putative, expressed
Brachypodium v1_2	Bradi3g30560.1	371	0.0
Arabidopsis v10	AT4G34660.1	368	7e-178	SH3 domain-containing protein \| chr4:16545595-16548294 REVERSE LENGTH=368