barSeed - Barley Seed Development Database

Probe CUST_38321_PI390587928

Source Contig U35_31959

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38321_PI390587928	Hv_44K_v2	AGAAGTTTGGGCCCCCATCCTTCGCAGGAAACATCCTGCTCTGCGGCTACTCTGCTTCTT	302	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365335	2819	2e-24	1206 - 1265	100	60 / 60	plus	None
MLOC	AK357808	2754	2e-24	1148 - 1207	100	60 / 60	plus	None
MLOC	MLOC_82037.1	876	2e-24	498 - 557	100	60 / 60	plus	None
JLOC1	JLOC1_54565.1	863	8e-25	485 - 544	100	60 / 60	plus
Harvest35	U35_31959	411	3e-25	303 - 362	100	60 / 60	plus

Contig Sequence (411 bp)

>U35_31959 411 Hv_44K_v2
AGCCATCACCGGGACCTACCAGCTCGTCTTCCTCAGCCTCGCGCACAACACACTCGACGG
GCCAGTGCCGGAGTCGCTCGCGGGGCTCACCAAGCTGCAGGACCTCAACCTCTCCGGCAA
CAGCCTCAACGGCTCCATTCCCGACAACCTCGGGTCGCTTCACGACCTCAAGGCGCTCGA
CCTCTCCGGGAACGCGCTCGCCGGAGAGATCCCGGAGAGCCTCGCCAACCTCACCACCAC
GCTCCAGTCCTTCAACGTCTCCTACAACAACCTCTCCGGCGCCGTGCCGGCCTCGCTCGT
ACAGAAGTTTGGGCCCCCATCCTTCGCAGGAAACATCCTGCTCTGCGGCTACTCTGCTTC
TTCGCCGCCCTGCCCGGTATCGCCATCCCCCGCGCCAGCATCACCCGGGCA

Homology of Contig U35_31959 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g01620.2	612	3e-52	protein\|inactive receptor kinase At2g26730 precursor, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	None