barSeed - Barley Seed Development Database

Probe CUST_38318_PI390587928

Source Contig U35_17668

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38318_PI390587928	Hv_44K_v2	GAAGCTGATACAGTTATTGTTGGTATAGGAGCAAAACCATCTGTCAGCCCCTTCGAAGCT	429	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363669	3474	2e-24	1018 - 1077	100	60 / 60	plus	ABC07230 ABC13844 ABC17852 ABC41122 ABC44969
MLOC	AK357867	1769	2e-24	963 - 1022	100	60 / 60	plus	ABC07230
MLOC	MLOC_66210.1	1270	2e-24	45 - 104	100	60 / 60	minus	ABC07230
MLOC	MLOC_66210.2	1437	2e-24	45 - 104	100	60 / 60	minus	ABC07230
JLOC1	JLOC1_43612.1	1366	8e-25	1157 - 1216	100	60 / 60	plus
Harvest21	ABC07228	824	3e-25	430 - 489	100	60 / 60	plus
Harvest35	U35_17668	824	3e-25	430 - 489	100	60 / 60	plus

Contig Sequence (824 bp)

>U35_17668 824 Hv_44K_v2
ACCTCGAAAACTTCATCAGGGAAAATTCTGAAGTATGGGTCACTTATCATTTCTACTGGT
TGTGCAGCTGCAAGATTACCTGAGAAAATTGGAGGAAACTTACCTGGAGTTCACTATATA
CGTGACGTTGCTGATGCTGATTCTCTAGTATCTTCATTGGGAAAATCAAAGAAAATTGTT
GTTATTGGTGGGGGCTATATTGGCATGGAGGTAGCTGCTGCAGCTTGTGGCTGGAATCTT
GACACAACTATAATATTCCCAGAAGACCACATAATGCCAAGATTATTTACGCCTTCGCTT
GCTAAGAAGTATGAGGAACTGTATGAGCAAAATGGTGTCAAATTCGTAAAGGGAGGTCTC
ATCAGCAAACTTGATGCTGGTTCTGATGGAAGGGTGTCTTCGGCTATACTTAAAGATGGT
TCTGTTGTTGAAGCTGATACAGTTATTGTTGGTATAGGAGCAAAACCATCTGTCAGCCCC
TTCGAAGCTGTGGGAGTTAACAACGAAGTTGGTGGAATAGAGGTTGATTCCATGTTTAGA
ACAAGTATACCTAGCATCTTTGCTATCGGAGATGTGGCAGCTTTTCCGCTCAAGATGTAT
GATAGAATAGCTCGAGTGGAGCATGTGGATCATGCTAGAAAGTCTGCACAACATTGTATA
GAAACACTCTTAACATCCCAGGCAAAAGCGTATGACTACCTTCCGTATTTCTATTCTCGA
GTTTTTGAGTATGAAGGAAGCTCCAGGAAAATTTGGTGGCAATTCTATGGAGATAATGTT
GGTGAAACANTTGAAGTAGGGAACTTTGATCCTAAGATAGCTAC

Homology of Contig U35_17668 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g05570.4	492	3e-153	protein\|monodehydroascorbate reductase, putative, expressed
Brachypodium v1_2	Bradi3g17120.2	496	4e-164
Arabidopsis v10	AT1G63940.2	493	1e-133	\| Symbols: MDAR6 \| monodehydroascorbate reductase 6 \| chr1:23730095-23733534 FORWARD LENGTH=493